User: agatyr

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agatyr20
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3 weeks, 5 days ago
Joined:
7 months, 3 weeks ago
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Posts by agatyr

<prev • 4 results • page 1 of 1 • next >
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Comment: C: Workflow with collections
... Many many thanks! Really works now. ...
written 11 weeks ago by agatyr20
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Answer: A: Workflow with collections
... Thank you Jen! I've figured out the problem with left-to-right connections, and I override it using copying of the downstream blocks and reconnecting, it's OK. But I tried to use input for BWA-MEM, and I cannot connect the "Input dataset collection" to "Select a paired collection", it does not turn ...
written 11 weeks ago by agatyr20
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Workflow with collections
... The task was to download several SRAs from NCBI, align to reference genome, find SNPs. I made many attempts to use collections in workflow, but it broke at some point. When I tried to figure out the cause of it I come to following observation: when I use BWA-MEM manually, point it to "list of pairs" ...
collection inputs galaxy editor workflow written 12 weeks ago by agatyr20
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Answer: A: SAM-to-BAM; an error occurred setting the metadata for this dataset.
... Same problem: BWA-MEM does not work today. It results in 0 bytes bam file, and "setting the metadata" error. Few days ago everything was OK. ...
written 3 months ago by agatyr20

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