User: EHC

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EHC10
Reputation:
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New User
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Last seen:
7 months, 2 weeks ago
Joined:
7 months, 3 weeks ago
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e******@openu.ac.il

Posts by EHC

<prev • 5 results • page 1 of 1 • next >
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Comment: C: BAM files on IGV look empty
... bam 3.1MB; bam.bai 2 KB Thanks! ...
written 7 months ago by EHC10
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BAM files on IGV look empty
... Thanks for your previous help. I use these demonstration files https://zenodo.org/record/582600#.WczAmkojFhA uploaded them as fastqsanger and run bwa-mem with NC_007795.1 reference after NormalizeFasta. I got a BAM file. I would like to view the BAM on IGV locally but can not. I have igv locally ...
bam igv bwa-mem written 7 months ago by EHC10 • updated 5 months ago by Jennifer Hillman Jackson25k
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Comment: C: Tool does not recognise dataset as input
... Thanks for the help. it worked (although I tried that before ..). However I do not manage to see the bam on igv. I have igv locally and open it first but it seems as empty if I use the local link or even if I download the galaxy bam/bam.bai and upload to igv independently. Thanks! ...
written 7 months ago by EHC10
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Answer: A: Tool does not recognise dataset as input
... Thanks for the help. it worked (although I tried that before ..). However I do not manage to see the bam on igv. I have igv locally and open it first but it seems as empty if I use the local link or even if I download the galaxy bam/bam.bai and upload to igv independently. Thanks! ...
written 7 months ago by EHC10
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Tool does not recognise dataset as input
... Hello, I am trying to built a very small demonstration for class. I looking to show: paired fastq upload -> bwa or bowtie mapping ->igv. I checked a variety of teaching material. I tried these two: https://zenodo.org/record/582600#.WczAmkojFhA https://zenodo.org/record/842795#.WczGGEojFhA ...
fastqsanger dataset datatype tool fastq written 7 months ago by EHC10

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