User: Cory Dunn

gravatar for Cory Dunn
Cory Dunn40
Reputation:
40
Status:
New User
Location:
Turkey
Last seen:
2 years, 9 months ago
Joined:
4 years, 10 months ago
Email:
c****@ku.edu.tr

Posts by Cory Dunn

<prev • 5 results • page 1 of 1 • next >
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-nan in Cuffdiff run
... Dear Galaxy Experts: Today while running Cuffdiff, some of the FPKM values were reported as "-nan".  Strangely, running with exactly the same Cuffdiff parameters and exactly the same TopHat output files worked fine in an earlier instance.  What could be the reason for this problem? Thanks for any ...
rna-seq written 2.8 years ago by Cory Dunn40 • updated 2.7 years ago by Jennifer Hillman Jackson25k
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Comment: A: Error with cuffdiff
... I'm not getting an error message now, but the output seems to be an SQLite database file, rather than the tabular data that has previously been the output of Cuffdiff.  I've never used R or cummeRbund - the tabular data were easy to handle and are preferred.  Are we now forced to receive our output ...
written 3.3 years ago by Cory Dunn40
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Comment: A: Error with cuffdiff
... Hi there:   I'm having the same problem today, Dan.  I think it's something systemic, and not with your approach/data.   -Cory ...
written 3.3 years ago by Cory Dunn40
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Answer: A: Re: Galaxy-User Digest, Vol 26, Issue 6
... Dear Graham, Thanks for the info. However, my problem is that the "Tool Version" field is completely empty in my history items (eg. Tophat2, Cuffdiff). I suppose I can check the dependancies list you described, but it would be important to know precisely which version was run on any given query. ...
written 4.9 years ago by Cory Dunn40
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Cuffdiff Version Not Apparent
... Dear Galaxy Staff: I was wondering which version of Cuffdiff is currently running on Galaxy. The wrapper version is 0.0.6, but I did not see the actual version of the underlying software under the "Tool Version" field (please see attached screen grab). Thanks for your help, Cory Dunn [image: In ...
galaxy written 4.9 years ago by Cory Dunn40 • updated 4.9 years ago by graham etherington (TSL)100

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