User: starr34

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starr3420
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Posts by starr34

<prev • 5 results • page 1 of 1 • next >
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Comment: C: DE analysis of miRNA after mapping with miRDeep2 quantifier
... Thank you for the very clear directions. When building the dataset list it would not let me rename these (but I just used them as is) and then unfortunately, I got the following error: "failure preparing job" when trying to run DESeq2 with the dataset lists. It seems that this program as well really ...
written 11 weeks ago by starr3420
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DE analysis of miRNA after mapping with miRDeep2 quantifier
... After small RNA sequencing I performed adapter, quality, and length trimming on fastq files. I then used miRDeep2 mapper to collapse reads followed by using miRDeep2 Quantifier to map the collapsed reads to miRbase fasta file for mature sequences. My output is a tabular file with 6 columns: miRNA na ...
mirna differential expression written 11 weeks ago by starr3420 • updated 11 weeks ago by dilmurat.yusuf10
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Comment: C: rgrnastar toolshed repo (RNA STAR) not configured properly in a local Galaxy - h
... The uninstall/re-install did not work. I am unsure how to tell which Galaxy version I am currently using. It is the newest AMI that has been put out for that Galaxy but its possible its an old version since I just learned today that they can't easily update it. I'll try using the public galaxy for t ...
written 3 months ago by starr3420
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Comment: C: rgrnastar toolshed repo (RNA STAR) not configured properly in a local Galaxy - h
... I tried that already. I had set it to be put under NGS:RNA Analysis. I searched under this category and also performed a search once I couldn't find it there. ...
written 3 months ago by starr3420
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rgrnastar toolshed repo (RNA STAR) not configured properly in a local Galaxy - help
... I tried to install a new tool to my Galaxy instance from a toolshed (toolshed.g2.bx.psu.edu): tool is rgrnastar (owner: iuc); (revision:d681e989ac95). When I go to "manage installed tool shed repositories" the status for this tool says "installed" however the tool never showed up in my tool list. I ...
rnastar galaxy tool rna-seq written 3 months ago by starr3420 • updated 3 months ago by Jennifer Hillman Jackson23k

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