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- 8 months, 3 weeks ago
Posts by dollykc
... Hello, I have reads from three paired-end libraries and they have been merged, so for each library I have 3 files: merged reads, unmergedR1, unmergedR2. I would like to use these as inputs into Salmon. On the Galaxy menu, it asks if my library is mate-pair and I choose paired-end. Then it gives t ...
... Sounds like something similar just happened to me. I tried running Trinity on a dataset with ~38 million reads. After 18 hours, it looked like it finished, everything was green, but the following message was in the history. Running Trinity from /local/2985876 slurmstepd: error: Exceeded step me ...
... The excel template you get from Krona tools is about categories of granola. The instructions they give for using it for your own stuff were not clear to me. Therefore I have turned to Galaxy. All I want is a Krona graph of the taxonomy of my 16S microbial results. I already have all the Mothur a ...
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