User: dollykc

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dollykc10
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Posts by dollykc

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Input Merged and unmerged paired end read files into Salmon
... Hello, I have reads from three paired-end libraries and they have been merged, so for each library I have 3 files: merged reads, unmergedR1, unmergedR2. I would like to use these as inputs into Salmon. On the Galaxy menu, it asks if my library is mate-pair and I choose paired-end. Then it gives t ...
merged reads galaxy unmerged reads salmon written 11 weeks ago by dollykc10 • updated 10 weeks ago by Jennifer Hillman Jackson25k
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Comment: A: Trinity "Exceeded step memory limit" error?
... Sounds like something similar just happened to me. I tried running Trinity on a dataset with ~38 million reads. After 18 hours, it looked like it finished, everything was green, but the following message was in the history. Running Trinity from /local/2985876 slurmstepd: error: Exceeded step me ...
written 3 months ago by dollykc10
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get krona graph from mothur output
... The excel template you get from Krona tools is about categories of granola. The instructions they give for using it for your own stuff were not clear to me. Therefore I have turned to Galaxy. All I want is a Krona graph of the taxonomy of my 16S microbial results. I already have all the Mothur a ...
galaxy krona written 11 months ago by dollykc10 • updated 11 months ago by Jennifer Hillman Jackson25k

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