User: cucucucoco

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cucucucoco0
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Posts by cucucucoco

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Comment: C: Select a reference genome
... Thank you. but i got one more question. if i have to use HIV-1 genome using custom genome/build section, what form is available? Fast -A?? i downloaded in NCBI to FastA file. (https://www.ncbi.nlm.nih.gov/nuccore/AF033819) was it right??? if i want to annotate about HIV-1 NCBI dataset. how can i ann ...
written 11 weeks ago by cucucucoco0
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(Closed) ParClip analysis Question please give me information very detail.
... HI ! I would like analysis Par Clip Data set in NCBI GEO. so i read some paper that conducted Par Clip analysis using Paralyzer. as far as I know, Paralyzer is no more using. isn't it? Could you konw me if you know replacemnt of Paralyzer tool it can use in galaxy to ParClip analysis. also toturial ...
par-clip clip-seq rna-seq written 11 weeks ago by cucucucoco0 • updated 11 weeks ago by Jennifer Hillman Jackson23k
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Select a reference genome
... HI! i wonder what mean hg19? hg38? I want to mapping ro HIV-1 virus genome or infected HIV-1 cell. so What i sselect reference genome? and i dont know, normal hg19 and hg19 Canonical what different are? ...
bowtie alignment rna-seq written 12 weeks ago by cucucucoco0 • updated 11 weeks ago by Jennifer Hillman Jackson23k
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Can you see what i got problem??
... I did uproading file through EBI homepage about NCBI Geo dataset SRR 5682257 &5682258. [EBI SRA: SRX2917412 File: ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR568/007/SRR5682257/SRR5682257.fastq.gz] and it was convert using FASTQ Groomer Tool (convert between various FASTQ quality formats) at NGS: QC a ...
galaxy fastqc quality control written 3 months ago by cucucucoco0 • updated 12 weeks ago by Jennifer Hillman Jackson23k

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