User: a.morris

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a.morris10
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3 months, 1 week ago
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a*******@imperial.ac.uk

Posts by a.morris

<prev • 6 results • page 1 of 1 • next >
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Comment: C: C: Bias Correction : Locally cached human reference sequence data
... Just found out that the Cufflinks detects only hg_g1k_v37 and not hg19, which solves the problem ...
written 24 days ago by a.morris10
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Using DEXSeq count on a sliced bam or sam file
... Using DEXSeq count on a sliced bam or sam file does not seem to run properly. The output file reads eg., as follows: ambiguous 0 _ambiguous_readpair_position 0 _empty 9893 _lowaqual 0 _notaligned 0 The sliced file had the hg19 genome database . ...
rna-seq written 24 days ago by a.morris10 • updated 24 days ago by Jennifer Hillman Jackson23k
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C: Bias Correction : Locally cached human reference sequence data
... Hello Jennifer, your most answer correctly identified a problem with Cuffdiff returning red boxes last week. However this week I am using Cufflinks. Under the Biass correction option (Yes) and cached Ref sequence data, the using reference genome only returns "no options available. Last time I ...
cufflinks written 24 days ago by a.morris10 • updated 24 days ago by Jennifer Hillman Jackson23k
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Bias Correction : Locally cached human reference sequence data
... For a cufflinks run, Galaxy detected up human (homo Sapiens) hg19 for the locally cached reference sequence data but , follwoing execution, it returned a pink error msg: "Parameter index requires a value, but has no legal values defined." ...
cufflinks written 25 days ago by a.morris10 • updated 24 days ago by Jennifer Hillman Jackson23k
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Jobs running for over 24 hours ( still unfinished) that previously took a few hours?
... I have started to run Tophat twice for 4 datasets. Both attempts have resulted in the jobs still running 24 hours later. In the past such jobs took a few hours not over 24 hours. No error messages are shown ...
galaxy rna-seq written 6 weeks ago by a.morris10 • updated 6 weeks ago by Jennifer Hillman Jackson23k
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Research on RNA SEQ
... Please recommend instructions for day to day handling of the disk space in galaxy. Ive only done 3 out of 38 samples and its full, so the samples in history need to managed on a weekly basis. ...
quota space galaxy written 3 months ago by a.morris10 • updated 3 months ago by Martin Čech ♦♦ 4.2k

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