User: cecelia.kelly

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Comment: C: Cuffdiff: selecting replicates in a different order gives me different numbers o
... Hi Jennifer, Thanks for your response. Could you clarify what you mean by "the first two inputs"? Do you mean the first input of each group or the first two inputs of each group are directly compared? Also, if only the first two inputs are compared, what is the use of inputting additional replicates ...
written 12 months ago by cecelia.kelly0
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Cuffdiff: selecting replicates in a different order gives me different numbers of differentially expressed genes. Why?
... I have two groups with four biological replicates per group. I tried comparing group 1 to group 2 using cuffdiff. I got 544 significantly differentially expressed genes as my result. My lab mate ran the exact same differential expression analysis with the exact same settings and got ~1500 differenti ...
cuffdiff rnaseq tophat written 13 months ago by cecelia.kelly0 • updated 12 months ago by Jennifer Hillman Jackson25k

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