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Posts by cecelia.kelly
... Hi Jennifer, Thanks for your response. Could you clarify what you mean by "the first two inputs"? Do you mean the first input of each group or the first two inputs of each group are directly compared? Also, if only the first two inputs are compared, what is the use of inputting additional replicates ...
Cuffdiff: selecting replicates in a different order gives me different numbers of differentially expressed genes. Why?
... I have two groups with four biological replicates per group. I tried comparing group 1 to group 2 using cuffdiff. I got 544 significantly differentially expressed genes as my result. My lab mate ran the exact same differential expression analysis with the exact same settings and got ~1500 differenti ...
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