User: majeedaasim

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Posts by majeedaasim

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read representation using trinity
... Is there any way to analyse the trinity assembly for RNA seq read representation and Transcriptome Contig Nx and ExN50 stats in galaxy. thanks ...
read representation trinity written 9 months ago by majeedaasim0 • updated 9 months ago by Jennifer Hillman Jackson25k
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PhyML "Try_One_Spr_Move_Triple "error
... My system info is `Distributor ID: Ubuntu` `Description: Ubuntu 16.04.3 LTS` `Release: 16.04` `Codename: xenial` I created a MSA of 915 AA sequences by MUSCLE. After that I ran PhyML but it gives me the following error: `== Err. in file spr.c at line 4312 (function 'Try_One_Spr_Move_Triple') ...
phyml error written 9 months ago by majeedaasim0 • updated 9 months ago by Jennifer Hillman Jackson25k
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problem in transcriptome assembly
... I successfully assembled my raw reads to generate assembly. But when I concatenate the reads, the assembly fails in Trinity . I used Trinity on galaxy as well but there too it failed. what could be the problem. Thanks ...
assembly written 11 months ago by majeedaasim0 • updated 11 months ago by Jennifer Hillman Jackson25k

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