User: gm

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gm0
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Posts by gm

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bacterial complete nt database to apply blastn
... Hi all, the present question has been many times addressed but I failed to find any definitive and satisfying answer. I'm trying to run blustn from Galaxy. I'm interested in finding bacterial contaminants within my contigs. Which is the most effective and easier way to create such a complete db? ...
galaxy blastn database blast reference written 6 months ago by gm0 • updated 6 months ago by Jennifer Hillman Jackson25k
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Answer: A: how to relate BWA input parameters to get minimum coverage and identity
... Thanks for your kind support. I'll have a try. ...
written 13 months ago by gm0
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how to relate BWA input parameters to get minimum coverage and identity
... Hi all and thanks in advance for any help you will kindly provide. I'm aligning some short sequences against a few databases by means of BWA. I need to recover bot identity and coverage in a fast way at the end of the alignemnet. I read that I can use the M field in CIGAR form SAM and further param ...
alignment written 14 months ago by gm0

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