User: Mikel Egaña Aranguren

Reputation:
10
Status:
New User
Location:
Spain
Website:
http://mikeleganaarang...
Twitter:
mikel_egana
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Google Scholar Page
Last seen:
3 years ago
Joined:
4 years, 2 months ago
Email:
m********************@gmail.com

Posts by Mikel Egaña Aranguren

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Comment: C: Error executing Bowtie2: bam_index_build2() not yet implemented
... Yes, using a local samtools 0.1.19 worked, many thanks! ...
written 3.1 years ago by Mikel Egaña Aranguren10
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Error executing Bowtie2: bam_index_build2() not yet implemented
... I'm trying to execute Bowtie2 in Galaxy but I get the following Dataset generation error: Traceback (most recent call last): File "/home/galaxy/galaxy-dist/lib/galaxy/jobs/runners/local.py", line 118, in queue_job job_wrapper.finish( stdout, stderr, exit_code ) File "/home/galaxy/galaxy-di ...
bam datatypes dataset generation bowtie metadata written 3.2 years ago by Mikel Egaña Aranguren10 • updated 3.2 years ago by Bjoern Gruening4.8k
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Empty Bowtie2 Output
... Hi; I'm trying to use the bowtie2 wrapper but it generates and empty output with the "no peek" sign. I have sucesfully recreated the analysis with the same datatsets on the shell, so it must be something to do with Galaxy, but I don't know where to look at. Any clues? Thanks I'm using bowtie2-2.1. ...
bowtie alignment written 4.2 years ago by Mikel Egaña Aranguren10 • updated 4.2 years ago by Jennifer Hillman Jackson23k

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