User: rporterfield

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Posts by rporterfield

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Comment: C: Stringtie "GffNameList Error: invalid index (-1)"
... Yes, the pipeline we are using has HISAT specifications for cufflinks and stringtie. This pipeline has worked many other times but has trouble with select SRA data. I am just trying to find a fix for it so we do not have to throw away any data. Thanks ...
written 3 months ago by rporterfield0
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Stringtie "GffNameList Error: invalid index (-1)"
... Hello, I am doing some transcriptome assembly using Stringtie as well as other assemblers. I am running the assemblies with trimmed and filtered bam files and a reference genome. The other assemblers I am using are working fine with the SRA data I provide them. For some reason, Stringtie works about ...
stringtie namelist error gff error written 4 months ago by rporterfield0 • updated 4 months ago by Jennifer Hillman Jackson23k

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