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Posts by rporterfield
... Yes, the pipeline we are using has HISAT specifications for cufflinks and stringtie. This pipeline has worked many other times but has trouble with select SRA data. I am just trying to find a fix for it so we do not have to throw away any data. Thanks ...
... Hello, I am doing some transcriptome assembly using Stringtie as well as other assemblers. I am running the assemblies with trimmed and filtered bam files and a reference genome. The other assemblers I am using are working fine with the SRA data I provide them. For some reason, Stringtie works about ...
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