User: Lauren Oldfield

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l****@pitt.edu

Posts by Lauren Oldfield

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Generating Pileup With Max Depth Greater Than 8000?
... My question: How can I generate a pileup with an output of more than 8000 hits per base? I was generating pileups using the SAM tools --> Generate pileup and do not see an option to change the settings for output. In mpileup there is a variable that looks correct, -D (Output per-sample read depth ...
mpileup written 4.2 years ago by Lauren Oldfield10 • updated 4.2 years ago by Peter Cock1.4k

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