User: marija.djurdjevic

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m****************@klinikum-graz.at

Posts by marija.djurdjevic

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Comment: C: install dependencies over conda
... Those are settings from galaxy.ini: conda_prefix = /home/data/galaxy_tool_dep/_conda/ conda_exec = /home/data/galaxy_tool_dep/_conda/bin/conda conda_debug = True conda_ensure_channels = iuc,bioconda,r,defaults,conda-forge conda_auto_install = True conda_auto_init = True ...
written 4 days ago by marija.djurdjevic30
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Answer: A: install dependencies over conda
... Dear Jen, Thanks for your response. I have the latest version of Galaxy and HISAT was just an example. I have the same issue installing other tool dependencies and even running tools which have conda dependencies. I also went through a lot of posts everywhere, but unfortunately I couldn't solve m ...
written 5 days ago by marija.djurdjevic30
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install dependencies over conda
... Hi, I have issue installing tool dependencies over conda (over Manage Tool Dependencies in Admin panel): Traceback (most recent call last): File "/home/data/galaxy_tool_dep/_conda/bin/conda", line 6, in sys.exit(conda.cli.main()) File "/home/galaxy/galaxy/.venv/local/lib/python2. ...
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Answer: A: Upgrade Galaxy to new release
... Hi all, I have similar problem with galaxy upgrade. I tried to do `git checkout release_17.05 && git pull --ff-only origin release_17.05.` but since I have changes in some files I got error message: Already on 'release_17.05' From https://github.com/galaxyproject/galaxy * bran ...
written 18 days ago by marija.djurdjevic30

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