User: marija.djurdjevic

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1 week, 1 day ago
Joined:
2 months, 2 weeks ago
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m****************@klinikum-graz.at

Posts by marija.djurdjevic

<prev • 5 results • page 1 of 1 • next >
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Extract assembled transcripts from Cufflinks gtf without to use reference genome
... Hi all, I know there were similar questions, but unfortunately I couldn't find proper answer for my problem. I am doing de novo transcriptome assembling of unknown fish. I used Trinity for that purpose and I acceptable assemblies. I also did genome-guided assembling with STAR->Cufflinks using c ...
bam samtools cufflinks gtf rna-seq written 15 days ago by marija.djurdjevic30 • updated 11 days ago by Jennifer Hillman Jackson22k
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Comment: C: install dependencies over conda
... Those are settings from galaxy.ini: conda_prefix = /home/data/galaxy_tool_dep/_conda/ conda_exec = /home/data/galaxy_tool_dep/_conda/bin/conda conda_debug = True conda_ensure_channels = iuc,bioconda,r,defaults,conda-forge conda_auto_install = True conda_auto_init = True ...
written 8 weeks ago by marija.djurdjevic30
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Answer: A: install dependencies over conda
... Dear Jen, Thanks for your response. I have the latest version of Galaxy and HISAT was just an example. I have the same issue installing other tool dependencies and even running tools which have conda dependencies. I also went through a lot of posts everywhere, but unfortunately I couldn't solve m ...
written 9 weeks ago by marija.djurdjevic30
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install dependencies over conda
... Hi, I have issue installing tool dependencies over conda (over Manage Tool Dependencies in Admin panel): Traceback (most recent call last): File "/home/data/galaxy_tool_dep/_conda/bin/conda", line 6, in sys.exit(conda.cli.main()) File "/home/galaxy/galaxy/.venv/local/lib/python2. ...
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Answer: A: Upgrade Galaxy to new release
... Hi all, I have similar problem with galaxy upgrade. I tried to do `git checkout release_17.05 && git pull --ff-only origin release_17.05.` but since I have changes in some files I got error message: Already on 'release_17.05' From https://github.com/galaxyproject/galaxy * bran ...
written 10 weeks ago by marija.djurdjevic30

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