User: Andreas Kuntzagk

Reputation:
130
Status:
New User
Location:
Last seen:
8 years, 8 months ago
Joined:
8 years, 11 months ago
Email:
a***************@mdc-berlin.de

Posts by Andreas Kuntzagk

<prev • 13 results • page 1 of 2 • next >
0
votes
2
answers
1.6k
views
2
answers
Comment: C: Setting Environment For Sge Scripts
... Hi, It is set in ~/.bashrc, which is source by ~/.bash_profile. If I normally login to a cluster node via ssh it is set correctly. But if I qsub a job, it is not read. Except when I set the "-V" switch. So I either need to change gridengines behaviour or make galaxy use that switch. Is there a ea ...
written 8.7 years ago by Andreas Kuntzagk130
0
votes
2
answers
1.6k
views
2
answers
Setting Environment For Sge Scripts
... Hi, I followed the advice for multiple installed python versions to set ~galaxy/galaxy-python/python and set the environment for the galaxy user to have that in the PATH Problem is, when a job is started on GridEngine, it does not use the "-V" flag to inherit the environment. So it runs with a dif ...
galaxy written 8.7 years ago by Andreas Kuntzagk130 • updated 8.2 years ago by Pieter Neerincx360
0
votes
1
answer
700
views
1
answers
Answer: A: After Copy Of Galaxy Not Starting
... Hi, I found that some of our local tools hardcoded paths. Do find out if this caused the problems further testing is needed. Please disregard this bug report until I can confirm the bug still exists. regards, Andreas ...
written 8.8 years ago by Andreas Kuntzagk130
0
votes
1
answer
700
views
1
answer
After Copy Of Galaxy Not Starting
... Hi, to run a second copy of local galaxy I just copied the whole directory (cp -ra ) I then just edited the universe_wsgi.ini to use a different port. Now when I start run.sh in I get following error: galaxy.jobs INFO 2009-09-24 13:03:27,136 job stopper started Traceback (most recent call last): ...
galaxy written 8.8 years ago by Andreas Kuntzagk130
0
votes
1
answer
1.1k
views
1
answer
Bug: Using The Python Builtin "Id" As Parameter Or Variable Name
... Hi, we encountered this problem when trying to clone a shared workflow: ... File '/data/bioinformatics/galaxy/lib/galaxy/web/security/__init__.py', line 45 in decode_id return int( self.id_cipher.decrypt( id.decode( 'hex' ) ).lstrip( "!" ) ) AttributeError: 'builtin_function_or_method' object ha ...
galaxy written 8.8 years ago by Andreas Kuntzagk130 • updated 8.8 years ago by Greg Von Kuster840
0
votes
1
answer
664
views
1
answer
Import Local Files
... Hi, to reduce traffic when importing big dataset into our local galaxy we would like to copy directly from the fileserver (which is accessible from the galaxy server via NFS) into galaxy without moving through the users desktop computer. Is there already such a tool by chance? At a glance I could o ...
galaxy written 8.8 years ago by Andreas Kuntzagk130 • updated 8.8 years ago by Greg Von Kuster840
0
votes
1
answer
539
views
1
answer
History "Disappearing" When Using Tags
... Hi, we just noticed a bug: we added a tag to history. Then we run a tool. After that the list of datasets in the right pane just disappeared. This is in rev 2690. Could not find any related update. regards, Andreas ...
written 8.8 years ago by Andreas Kuntzagk130 • updated 8.8 years ago by James Taylor320
0
votes
1
answer
843
views
1
answers
Comment: C: Update Galaxy
... Hi, Ok, where could I set it? I'd also like to discard the "We are hiring" message since we are not hiring :-) Ok, the update worked. Thanks, Andreas ...
written 8.8 years ago by Andreas Kuntzagk130
0
votes
1
answer
867
views
1
answer
Python 2.6
... Hi, I know that 2.6 is not supported right now (and we had some problems when we tried the latest version with 2.6) So are there any plans to move to 2.6 in the near future? regards, Andreas ...
written 8.8 years ago by Andreas Kuntzagk130 • updated 8.8 years ago by Greg Von Kuster840
0
votes
1
answer
843
views
1
answer
Update Galaxy
... Hi, I tried to update our local galaxy installation. I'm quite unexperienced with Mercurial so I read up something on the web how to update. What I did is: hg pull hg update After that I tried to restart but got an error message that I need to run "sh manage_db.sh upgrade" which I did. So now it ...
galaxy written 8.8 years ago by Andreas Kuntzagk130 • updated 8.8 years ago by Greg Von Kuster840

Latest awards to Andreas Kuntzagk

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 98 users visited in the last hour