User: garentguuu

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garentguuu0
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Posts by garentguuu

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Hisat2 to cufflinks
... Hi, Recently, I tried use hisat2 to mapping RNA-seq, then use cufflinks to measure the gene expression in galaxy. I am curious about the step after hisat2. If I finished hisat2, should I need use to samtools to sort the bam file? Because I did not sort the output of hisat2, and it run well in cuffl ...
galaxy cufflinks rna-seq written 14 days ago by garentguuu0 • updated 11 days ago by Jennifer Hillman Jackson25k
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Answer: A: galaxy_filter_sam report error
... Thanks for you help. After I sorted the bam, it works well. Thank you! Garen ...
written 22 days ago by garentguuu0
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galaxy_filter_sam report error
... Hi, Recently, I try to use samtools: Filter SAM or BAM, output SAM or BAM, but it reported that: ############################# Set it manually or retry auto-detection [E::hts_idx_push] Chromosome blocks not continuous ############################## I don't know what is wrong with ...
bam samtools galaxy sort picard written 23 days ago by garentguuu0
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Question: Trim Galore in Galaxy cannot work
... Hi, everyone, I have a problem about Galaxy trim galore tools. When I download data from SRA, Galaxy report the error: 1.8 Cutadapt terminated with exit signal: '256'. Terminating Trim Galore run, please check I don't know what happened with this tools. The input file is fastqsanger.gz from SRA. ...

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