User: drsrideviunni

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Posts by drsrideviunni

<prev • 8 results • page 1 of 1 • next >
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Comment: C: VCF combine only showing chromosome 1 in the output
... Could you please guide me the steps so that I can also follow the same method. Thank you. ...
written 10 days ago by drsrideviunni20
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Comment: C: VCF combine only showing chromosome 1 in the output
... Hello, I have already sent the red error bug report yesterday. Also, I tried to share the history through galaxy-bugs@lists.galaxyproject.org. However, it shows invalid galaxy user ID. Pls suggest me if there is another email ID. Thank you. ...
written 10 days ago by drsrideviunni20
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Comment: C: VCF combine only showing chromosome 1 in the output
... Yes, I am working on http://usegalaxy.org When I do the VCFcombine I do not get any error messages. So there is no bug report available. The program runs perfectly, and I get a single file as output which contains all my samples, but it shows only the top 130 lines (chromosome 1, not sure if it is ...
written 11 days ago by drsrideviunni20
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Comment: C: VCF combine only showing chromosome 1 in the output
... Hello, As suggested I did the Combine variants. I tried both .vcf files and also the sorted files. This created error messages. Unlike VCFCombine (which produces a single file), Combine Variants program create separate files for each input file, which I do not understand why. Please suggest ...
written 11 days ago by drsrideviunni20
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Comment: C: VCF combine only showing chromosome 1 in the output
... Hi, Thank you for the reply to my post. I sorted the .vcf files using vcf sort of Galaxy and ran the vcf combine. But the results are still the same. In my .vcf and sorted files I can see all the other chromosomes, but it is not showing up in the combined file. I really appreciate your help. ...
written 12 days ago by drsrideviunni20
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Answer: A: VCF combine only showing chromosome 1 in the output
... Hi, Thank you for the reply to my post. I sorted the .vcf files using vcf sort of Galaxy and ran the vcf combine. But the results are still the same. In my .vcf and sorted files I can see all the other chromosomes, but it is not showing up in the combined file. I really appreciate your help. ...
written 12 days ago by drsrideviunni20
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Comment: C: VCF combine only showing chromosome 1 in the output
... Please help me if any one has a solution for this. Hope this problem is common for everyone who uses galaxy for this application. ...
written 18 days ago by drsrideviunni20
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VCF combine only showing chromosome 1 in the output
... Hi, I tried many times to combine 32 .vcf files in Galaxy using VCF Combine. In the output file I can see only a few lines (chromosome 1). I downladed the file and the downloaded file also contain only few lines in it. Using the edit attributes tool I edited the Number of comment lines to larger ...
galaxy snp written 20 days ago by drsrideviunni20 • updated 10 days ago by Guy Reeves970

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