User: drsrideviunni

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Posts by drsrideviunni

<prev • 8 results • page 1 of 1 • next >
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Comment: C: VCF combine only showing chromosome 1 in the output
... Could you please guide me the steps so that I can also follow the same method. Thank you. ...
written 5 months ago by drsrideviunni20
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Comment: C: VCF combine only showing chromosome 1 in the output
... Hello, I have already sent the red error bug report yesterday. Also, I tried to share the history through galaxy-bugs@lists.galaxyproject.org. However, it shows invalid galaxy user ID. Pls suggest me if there is another email ID. Thank you. ...
written 5 months ago by drsrideviunni20
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Comment: C: VCF combine only showing chromosome 1 in the output
... Yes, I am working on http://usegalaxy.org When I do the VCFcombine I do not get any error messages. So there is no bug report available. The program runs perfectly, and I get a single file as output which contains all my samples, but it shows only the top 130 lines (chromosome 1, not sure if it is ...
written 5 months ago by drsrideviunni20
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Comment: C: VCF combine only showing chromosome 1 in the output
... Hello, As suggested I did the Combine variants. I tried both .vcf files and also the sorted files. This created error messages. Unlike VCFCombine (which produces a single file), Combine Variants program create separate files for each input file, which I do not understand why. Please suggest ...
written 5 months ago by drsrideviunni20
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Comment: C: VCF combine only showing chromosome 1 in the output
... Hi, Thank you for the reply to my post. I sorted the .vcf files using vcf sort of Galaxy and ran the vcf combine. But the results are still the same. In my .vcf and sorted files I can see all the other chromosomes, but it is not showing up in the combined file. I really appreciate your help. ...
written 5 months ago by drsrideviunni20
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Answer: A: VCF combine only showing chromosome 1 in the output
... Hi, Thank you for the reply to my post. I sorted the .vcf files using vcf sort of Galaxy and ran the vcf combine. But the results are still the same. In my .vcf and sorted files I can see all the other chromosomes, but it is not showing up in the combined file. I really appreciate your help. ...
written 5 months ago by drsrideviunni20
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Comment: C: VCF combine only showing chromosome 1 in the output
... Please help me if any one has a solution for this. Hope this problem is common for everyone who uses galaxy for this application. ...
written 5 months ago by drsrideviunni20
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VCF combine only showing chromosome 1 in the output
... Hi, I tried many times to combine 32 .vcf files in Galaxy using VCF Combine. In the output file I can see only a few lines (chromosome 1). I downladed the file and the downloaded file also contain only few lines in it. Using the edit attributes tool I edited the Number of comment lines to larger ...
galaxy snp written 5 months ago by drsrideviunni20 • updated 5 months ago by Guy Reeves1.0k

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