User: Wolfgang Maier

gravatar for Wolfgang Maier
Reputation:
550
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Trusted
Location:
Germany
Last seen:
4 weeks ago
Joined:
4 years, 11 months ago
Email:
w*************@biologie.uni-freiburg.de

Posts by Wolfgang Maier

<prev • 61 results • page 2 of 7 • next >
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Answer: A: snpff vrfiant analysis ref seq
... SnpEff genomes are built for specific versions of SnpEff. Did the version of the tool change between the different job runs (click on the rerun button of both one of your successful and failed jobs and take a look at the very top of the tool page where it says Galaxy Version x.y.z). If the versions ...
written 5 months ago by Wolfgang Maier550
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Comment: C: Covert fast.gz files to fastq
... I think so, too, but during that "unzipping on the fly" the dataset will remain gray (since Galaxy hasn't started the "real" job yet). So it could be that you just have to be patient :) ...
written 6 months ago by Wolfgang Maier550
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Answer: A: error in running MiModD Variant Calling
... Hi, the MiModD Variant Calling tool generates a BCF dataset, and Galaxy requires bcftools to index such files as part of finishing the job. Most likely, the error you are seeing is due to bcftools not being available to Galaxy. If you are getting this on an instance of Galaxy that you are administer ...
written 6 months ago by Wolfgang Maier550
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Comment: C: Personalised tool not running in local galaxy (always yellow but not sending com
... I'm not sure whether `from_work_dir` supports the variable lookup you are trying (I'm guessing it doesn't and that's why it's waiting for output to appear in the wrong place), but it is also unnecessary. You can just use a fixed file name in your `zip`, e.g.: `zip -r zipped_output.zip '$output_folde ...
written 6 months ago by Wolfgang Maier550
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Answer: A: Malformed Biostar RSS feeds
... Though I don't know what you did to fix it, the feed gets parsed by Thunderbird again. So my problem is solved. ...
written 6 months ago by Wolfgang Maier550
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Answer: A: remedial galaxy question
... Hi, there are the Select first and Select last lines from a dataset tools under Text Manipulation, which should do what you want. Best, Wolfgang ...
written 6 months ago by Wolfgang Maier550
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Answer: A: Malformed Biostar RSS feeds
... Hi Jen, I've opened the issue as you suggested: https://github.com/ialbert/biostar-central/issues/450 Thanks, Wolfgang ...
written 6 months ago by Wolfgang Maier550
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Malformed Biostar RSS feeds
... Hi, since last week I'm experiencing problems with following this forum via its rss feeds. I am reading some of the feeds listed at https://biostar.usegalaxy.org/info/rss/ through Thunderbird and it started to complain about malformed permalinks and xml recently. Firefox still happily displays all f ...
rss feed biostar-central written 6 months ago by Wolfgang Maier550
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Answer: A: How to use a CB reference strain constructed by myself in Hawaiian mapping in cl
... Hi, MiModD (https://celegans.de/mimodd/) is now the recommended (see http://hobertlab.org/cloudmap-2/) package for analyzing mutation mapping experiments. It will come to the Galaxy main server first thing in the new year, but you can use it locally now and dealing with your mapping strain is straig ...
written 8 months ago by Wolfgang Maier550
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Comment: C: Extract command line from Galaxy run?
... > Are you an admin on the Galaxy instance they're using? The command line is stored in the database. ... and is exposed to admin users under "View Details" of any Dataset. ...
written 17 months ago by Wolfgang Maier550

Latest awards to Wolfgang Maier

Scholar 5 months ago, created an answer that has been accepted. For A: Fetch Sequences for multiple datasets
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: MiModD request for installation
Scholar 6 months ago, created an answer that has been accepted. For A: Fetch Sequences for multiple datasets
Popular Question 13 months ago, created a question with more than 1,000 views. For importing gzipped files without having them decompressed
Scholar 2.8 years ago, created an answer that has been accepted. For A: Fetch Sequences for multiple datasets
Teacher 3.6 years ago, created an answer with at least 3 up-votes. For A: GALAXY_SLOTS not working
Teacher 3.7 years ago, created an answer with at least 3 up-votes. For A: GALAXY_SLOTS not working
Teacher 3.8 years ago, created an answer with at least 3 up-votes. For A: Can't get admin right in Galaxy local
Scholar 3.8 years ago, created an answer that has been accepted. For A: Fetch Sequences for multiple datasets
Scholar 4.0 years ago, created an answer that has been accepted. For A: Fetch Sequences for multiple datasets
Scholar 4.1 years ago, created an answer that has been accepted. For A: Fetch Sequences for multiple datasets
Teacher 4.1 years ago, created an answer with at least 3 up-votes. For A: Can't get admin right in Galaxy local
Teacher 4.2 years ago, created an answer with at least 3 up-votes. For A: Fetch Sequences for multiple datasets
Scholar 4.2 years ago, created an answer that has been accepted. For A: Fetch Sequences for multiple datasets

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