User: Wolfgang Maier

gravatar for Wolfgang Maier
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550
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Location:
Germany
Last seen:
1 month, 1 week ago
Joined:
4 years, 10 months ago
Email:
w*************@biologie.uni-freiburg.de

Posts by Wolfgang Maier

<prev • 61 results • page 1 of 7 • next >
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Answer: A: Cannot add an admin account after modifying galaxy.yml
... Are you still stuck with this? If so, have you left the indentation of the `admin_users: peerah@gmail.com` line intact, i.e., did you **only** remove the `#` or also the whitespace in front of it (which you shouldn't)? ...
written 6 weeks ago by Wolfgang Maier550
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Answer: A: Split VCF file
... I guess your problem comes from the header lines, which are present in VCF and start with a `#`. If your filter does not keep them, then the result is no longer vcf, but just general tabular data. Possible solutions: 1) Use the `Select lines that match an expression` tool with a regular expression ...
written 3 months ago by Wolfgang Maier550
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Answer: A: Rescue deleted files non purged ?
... Sure! Note the > x shown, y deleted stats displayed just beneath the history title? Clicking on the "y deleted" part will unhide the deleted datasets in your history bar. The ones you haven't purged yet should have an `Undelete it` link, which will do just what it says. ...
written 3 months ago by Wolfgang Maier550
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Comment: C: how to get the file of N2 SNP filtered
... > the maximum value of Y- axis is 0.7 ,less than 1,so that the curve graphs can not get its peak value ,and i cannot find the mutant region I don't think I understand this completely. Are you saying you are getting a peak (it would be nice if you could tell us with which tool, by the way) at 0.7 ...
written 3 months ago by Wolfgang Maier550
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Answer: A: how to get the file of N2 SNP filtered
... It is, at least, somewhat unusual to try to start with a Hawaiian reference. Normally, you'd use an N2 reference and a list of Hawaiian SNPs instead. From a previous thread it sounded as if you had access to both of these. Correct? Maybe you should follow this [tutorial][1] first. The MiModD tools ...
written 3 months ago by Wolfgang Maier550
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Comment: C: Inquiry about the C.elegans Feb 2009 (WS200/ce7) reference genome - source UCSC/
... > Firstly,I thought WS220/ce10 refers to the genome of CB4856,but i am not sure . And i need the genome of N2 to be the reference genome in my analysis. As I said before, WSxyz/cexy are always N2 references. The HA_SNPS_....vcf file you are mentioning is a file from the CloudMap workflow and lis ...
written 4 months ago by Wolfgang Maier550
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Answer: A: Inquiry about the C.elegans Feb 2009 (WS200/ce7) reference genome - source UCSC/
... I'm not sure I understand your follow-up question. N2 is the C. elegans reference strain so, of course, what's released by Wormbase is the N2 sequence. I think you have to understand that published reference genomes are not a static thing, but undergoing curation and corrections, meaning there exact ...
written 4 months ago by Wolfgang Maier550
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Answer: A: inquiry about the refference genome
... C.elegans Feb 2009(WS200/ce7)(ce7) means the version of the C. elegans reference genome published in Wormbase release WS200, which is identical to UCSC release ce7. Does that answer your question? ...
written 4 months ago by Wolfgang Maier550
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Comment: C: MiModD request for installation
... Only mimodd_main is installed there though, but you can align reads with bowtie2 (just make sure you provide sample information in the bowtie tool interface) and use the regular SnpEff wrappers for annotation. The basic worklow is described in [this training material][1]. [1]: http://galaxyproje ...
written 4 months ago by Wolfgang Maier550
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Answer: A: MiModD request for installation
... Hi, it is funny that you are asking just now because since today MiModD is available at https://usegalaxy.eu/ , the all new European counterpart of usegalaxy.org! You may want to give the tool a try there, while waiting for it to become available on your side of the Atlantic. It should work well, bu ...
written 4 months ago by Wolfgang Maier550

Latest awards to Wolfgang Maier

Scholar 4 months ago, created an answer that has been accepted. For A: Fetch Sequences for multiple datasets
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: MiModD request for installation
Scholar 5 months ago, created an answer that has been accepted. For A: Fetch Sequences for multiple datasets
Popular Question 12 months ago, created a question with more than 1,000 views. For importing gzipped files without having them decompressed
Scholar 2.7 years ago, created an answer that has been accepted. For A: Fetch Sequences for multiple datasets
Teacher 3.5 years ago, created an answer with at least 3 up-votes. For A: GALAXY_SLOTS not working
Teacher 3.6 years ago, created an answer with at least 3 up-votes. For A: GALAXY_SLOTS not working
Teacher 3.7 years ago, created an answer with at least 3 up-votes. For A: Can't get admin right in Galaxy local
Scholar 3.7 years ago, created an answer that has been accepted. For A: Fetch Sequences for multiple datasets
Scholar 4.0 years ago, created an answer that has been accepted. For A: Fetch Sequences for multiple datasets
Scholar 4.0 years ago, created an answer that has been accepted. For A: Fetch Sequences for multiple datasets
Teacher 4.0 years ago, created an answer with at least 3 up-votes. For A: Can't get admin right in Galaxy local
Teacher 4.1 years ago, created an answer with at least 3 up-votes. For A: Fetch Sequences for multiple datasets
Scholar 4.1 years ago, created an answer that has been accepted. For A: Fetch Sequences for multiple datasets

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