User: Wolfgang Maier

gravatar for Wolfgang Maier
Reputation:
600
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Location:
Germany
Last seen:
1 week, 3 days ago
Joined:
5 years, 2 months ago
Email:
w*************@biologie.uni-freiburg.de

Posts by Wolfgang Maier

<prev • 66 results • page 1 of 7 • next >
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Comment: C: MySQL db connection error or ?
... Hans-Rudolf has already provided some useful comments. If it is true that you are still getting the original `yaml.parser.ParserError` about some lines in your `galaxy.yml` file, then you are currently still fighting an issue with reading that file correctly (any additional problems with connecting ...
written 28 days ago by Wolfgang Maier600
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Answer: A: MySQL db connection error or ?
... try enclosing your settings in single quotes, e.g.: database_connection: 'mysql:///galax_db?unix_socket=/usr/sbin/mysqld.sock' ...
written 29 days ago by Wolfgang Maier600
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Answer: A: Problem in install galaxy
... Ah yes, I had this same issue before. Let me see if I can recapitulate why this happens and how to fix it: You don't really have to understand all of this, but: one of the first things a fresh instance of Galaxy does when run for the first time is to install a version of *pip*, a Python tool that c ...
written 5 weeks ago by Wolfgang Maier600
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Answer: A: Varscan on multiple samples generates error
... I'm not sure, but it looks as if, in your `samtools mpileup` run, you had selected the `Output mapping quality` option. This leads to insertion of columns 7 & 11 in the Pileup file and I don't know whether Varscan is prepared to handle this. Just a guess, but maybe it's worth trying. ...
written 5 weeks ago by Wolfgang Maier600
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Answer: A: Move data to new galaxy instance
... You will also have to move the database, i.e., not just the data itself, but also the info regarding which histories, users, etc. they are associated with. Depending on whether you were using a simple sqlite database or a more production-ready solution like PostgreSQL this would amount to either jus ...
written 6 weeks ago by Wolfgang Maier600
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Answer: A: Cannot add an admin account after modifying galaxy.yml
... Are you still stuck with this? If so, have you left the indentation of the `admin_users: peerah@gmail.com` line intact, i.e., did you **only** remove the `#` or also the whitespace in front of it (which you shouldn't)? ...
written 5 months ago by Wolfgang Maier600
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Answer: A: Split VCF file
... I guess your problem comes from the header lines, which are present in VCF and start with a `#`. If your filter does not keep them, then the result is no longer vcf, but just general tabular data. Possible solutions: 1) Use the `Select lines that match an expression` tool with a regular expression ...
written 7 months ago by Wolfgang Maier600
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Answer: A: Rescue deleted files non purged ?
... Sure! Note the > x shown, y deleted stats displayed just beneath the history title? Clicking on the "y deleted" part will unhide the deleted datasets in your history bar. The ones you haven't purged yet should have an `Undelete it` link, which will do just what it says. ...
written 7 months ago by Wolfgang Maier600
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Comment: C: how to get the file of N2 SNP filtered
... > the maximum value of Y- axis is 0.7 ,less than 1,so that the curve graphs can not get its peak value ,and i cannot find the mutant region I don't think I understand this completely. Are you saying you are getting a peak (it would be nice if you could tell us with which tool, by the way) at 0.7 ...
written 7 months ago by Wolfgang Maier600
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Answer: A: how to get the file of N2 SNP filtered
... It is, at least, somewhat unusual to try to start with a Hawaiian reference. Normally, you'd use an N2 reference and a list of Hawaiian SNPs instead. From a previous thread it sounded as if you had access to both of these. Correct? Maybe you should follow this [tutorial][1] first. The MiModD tools ...
written 7 months ago by Wolfgang Maier600

Latest awards to Wolfgang Maier

Scholar 8 months ago, created an answer that has been accepted. For A: Fetch Sequences for multiple datasets
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: MiModD request for installation
Scholar 9 months ago, created an answer that has been accepted. For A: Fetch Sequences for multiple datasets
Popular Question 16 months ago, created a question with more than 1,000 views. For importing gzipped files without having them decompressed
Scholar 3.0 years ago, created an answer that has been accepted. For A: Fetch Sequences for multiple datasets
Teacher 3.8 years ago, created an answer with at least 3 up-votes. For A: GALAXY_SLOTS not working
Teacher 3.9 years ago, created an answer with at least 3 up-votes. For A: GALAXY_SLOTS not working
Teacher 4.0 years ago, created an answer with at least 3 up-votes. For A: Can't get admin right in Galaxy local
Scholar 4.0 years ago, created an answer that has been accepted. For A: Fetch Sequences for multiple datasets
Scholar 4.3 years ago, created an answer that has been accepted. For A: Fetch Sequences for multiple datasets
Scholar 4.3 years ago, created an answer that has been accepted. For A: Fetch Sequences for multiple datasets
Teacher 4.3 years ago, created an answer with at least 3 up-votes. For A: Can't get admin right in Galaxy local
Teacher 4.5 years ago, created an answer with at least 3 up-votes. For A: Fetch Sequences for multiple datasets
Scholar 4.5 years ago, created an answer that has been accepted. For A: Fetch Sequences for multiple datasets

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