User: vtrevino

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vtrevino30
Reputation:
30
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Last seen:
3 months, 3 weeks ago
Joined:
5 months, 3 weeks ago
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v*******@itesm.mx

Posts by vtrevino

<prev • 6 results • page 1 of 1 • next >
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is mothur tool working ?
... I tried to use mothur (fastq.info) and I got an library access error: Fatal error: Exit code 127 () mothur: error while loading shared libraries: libboost_iostreams.so.1.57.0: cannot open shared object file: No such file or directory mothur: error while loading shared libraries: libboost_iostreams. ...
mothur written 3 months ago by vtrevino30 • updated 10 weeks ago by Jennifer Hillman Jackson23k
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Answer: A: Running FreeBayes to a collection of BAM files individually
... The annotations of the SM: into the BAM seems perfect to me. I will try this. Thanks for all your comments Guy and Jen. ...
written 4 months ago by vtrevino30
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Answer: A: Running FreeBayes to a collection of BAM files individually
... Jen and Guy, thanks for your answers. Guy, I agree with you and I understood the risks of running that individually but my goal was identifying the sample(s) where each sample comes from (the BAM file or so). I know that samples may also come in columns within the VCF but Freebayes shows only one co ...
written 4 months ago by vtrevino30
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ANNOVAR Not Working on VCF output
... I got an annovar error... **Log: tool progress Unknown option: vcfinput** It seems that this bug has been long known: https://biostar.usegalaxy.org/p/22830/ https://github.com/galaxyproject/galaxy/issues/4001 https://biostar.usegalaxy.org/p/15686/ It would be nice if fixed since VCF output is ea ...
annovar snp written 4 months ago by vtrevino30 • updated 4 months ago by Jennifer Hillman Jackson23k
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Running FreeBayes to a collection of BAM files individually
... Actually, the FreeBayes variant calling tool generates one VCF file for "all" BAM files selected (or within a chosen collection). This is counterintuitive compared with most Galaxy Tools. This is a problem because all variants are stored in one VCF with no identification of the sample presenting the ...
freebayes snp written 4 months ago by vtrevino30
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Comment: C: TopHat tool missing?
... Sorry, but I can't find the options "Report alignments tailored specifically for Cufflinks". ...
written 5 months ago by vtrevino30

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