User: Amalendu.Ghosh

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10
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New User
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Last seen:
1 year, 3 months ago
Joined:
1 year, 5 months ago
Email:
A*************@fda.hhs.gov

Posts by Amalendu.Ghosh

<prev • 5 results • page 1 of 1 • next >
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Bowtie2 not working
... Bowtie2 was working with my reads previously, but its stooped working since last few days. any idea? please let me know? ...
bowtie written 16 months ago by Amalendu.Ghosh10 • updated 16 months ago by Jennifer Hillman Jackson25k
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data limit of 250 gb
... is it possible to use more than 250 gb limit for short time to complete analysis of a dataset? ...
quota requests usegalaxy.org account written 16 months ago by Amalendu.Ghosh10 • updated 16 months ago by Jennifer Hillman Jackson25k
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Answer: A: how to merge multiple cufflink data in one file
... Hi Jen Thanks for following up! i used mm10 iGenomes GTF file with the tool along with the natively indexed mm10 genome/and mm10 genome uploaded by me which is actually came from igenome. the problem remains. can i send you the link so that you can see what is happening! thanks![enter li ...
written 17 months ago by Amalendu.Ghosh10
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Answer: A: how to merge multiple cufflink data in one file
... Firs of all Thank you Jennifer! yes i did alignment using in built mm10 genome and then did the cufflink using the igenome gtf file which i uploaded into the system. lets try to upload mm10 genome from i genome and use that as refference genome with HISAT. I am not using UCSC annotation file because ...
written 17 months ago by Amalendu.Ghosh10
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how to merge multiple cufflink data in one file
... how to merge multiple cufflink data in one file. what i am expecting is rows will represent gene name and column will represent the FPKM values. i tried cuffdiff too. and all the time i am getting error: Error: atal error: Matched on error [13:22:33] Loading reference annotation. [13:22:36] Inspecti ...
rna-seq written 17 months ago by Amalendu.Ghosh10

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