User: m_ko

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m_ko10
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1 year, 2 months ago
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1 year, 4 months ago
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m***@u.pacific.edu

Posts by m_ko

<prev • 15 results • page 1 of 2 • next >
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Answer: A: Trinity on queue
... Is the server for Trinity going through some kind of an update? ...
written 14 months ago by m_ko10
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Trinity on queue
... Hello, My jobs for Trinity have been on queue for a week. The jobs are still waiting to be run. When will the jobs start running? Thank you. ...
rna-seq written 14 months ago by m_ko10
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Comment: C: Trinity on Queue
... Hi again, I deleted the old jobs and started a new one yesterday but this one is still on queue as well. ...
written 15 months ago by m_ko10
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Comment: C: Trinity on Queue
... I see that my jobs are still queued. It has been over three days. It has worked fine before. ...
written 15 months ago by m_ko10
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Trinity on Queue
... Hello, My trinity job has been on queue since Saturday. Is has not taken this long before. Will the job be started soon? Thank you. ...
rna-seq trinity written 15 months ago by m_ko10 • updated 15 months ago by Jennifer Hillman Jackson25k
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(Closed) Trinity Error Message
... Hi, I recently ran trinity and my job failed (red) with this error message:Fatal error: Exit code 2 (Program failed) Sun/Oracle Java SE Development Kit version 1.7.0_51 unloaded. Sun/Oracle Java Runtime Environment version 1.8.0_73 loaded. Sun/Oracle Java SE Development Kit version 1.7.0_51 unloaded ...
rna-seq galaxy software error trinity written 16 months ago by m_ko10 • updated 16 months ago by Jennifer Hillman Jackson25k
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Comment: C: Salmon not working
... Yes, how do I go about splitting the file into two? Thank you. ...
written 16 months ago by m_ko10
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Comment: C: De novo transcriptome analysis pipeline
... I have not been able to get Salmon to work for the past four days. Following the instructions of a previous post, I deleted the old jobs and I have been starting new ones for the past few days but they remain on queue and do not progress.I tried it with the test datasets provided by Salmon and it wo ...
written 16 months ago by m_ko10
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Comment: C: Salmon not working
... Yes, I tried it with the test dataset and as you mentioned, it worked fine in a few minutes with the same results. I do think the problem is that my files are too large. The reference transcriptome is Xenopus (2.6GB) and my transcriptome from Trinity is 295.9 MB. Is there a different route that is r ...
written 16 months ago by m_ko10
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Answer: A: Salmon not working
... Yes, it worked fine before. The job would be completed in a few hours. ...
written 16 months ago by m_ko10

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