User: Mahesh.Hegde

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Posts by Mahesh.Hegde

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MiSeq data analysis
... Hi all, is it possible to analyse MiSeq data in Galaxy? Is it possible to check percentage of deletions (nearly 50-300 bp deletion) in Miseq data (in Fastq files)? Which method is best to analyse it? Thank you for the help in advance. ...
galaxy written 5 months ago by Mahesh.Hegde0 • updated 5 months ago by Jennifer Hillman Jackson23k
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Paired End FASTQ files
... Hi all, I have a question regarding paired end FASTQ files for chip-seq analysis. Which following step is better to start with? 1) With **FASTQ joiner** to join 2 paired end FASTQ files or 2) Directly align in Bowtie2 using 2 different files? (also, in bowtie what is the best option for **Do you w ...
chip-seq galaxy alignment written 5 months ago by Mahesh.Hegde0 • updated 5 months ago by Jennifer Hillman Jackson23k

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