User: Mahesh.Hegde

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Posts by Mahesh.Hegde

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MiSeq data analysis
... Hi all, is it possible to analyse MiSeq data in Galaxy? Is it possible to check percentage of deletions (nearly 50-300 bp deletion) in Miseq data (in Fastq files)? Which method is best to analyse it? Thank you for the help in advance. ...
galaxy written 14 months ago by Mahesh.Hegde0 • updated 14 months ago by Jennifer Hillman Jackson25k
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Paired End FASTQ files
... Hi all, I have a question regarding paired end FASTQ files for chip-seq analysis. Which following step is better to start with? 1) With **FASTQ joiner** to join 2 paired end FASTQ files or 2) Directly align in Bowtie2 using 2 different files? (also, in bowtie what is the best option for **Do you w ...
chip-seq galaxy alignment written 14 months ago by Mahesh.Hegde0 • updated 14 months ago by Jennifer Hillman Jackson25k

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