User: Law, Michael J.

Reputation:
20
Status:
New User
Location:
United States
Last seen:
2 years, 10 months ago
Joined:
4 years, 4 months ago
Email:
l****@rowan.edu

Posts by Law, Michael J.

<prev • 6 results • page 1 of 1 • next >
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Comment: C: Need help with "SICER" tool
... Thanks again! I was just writing to you that I located the file, and am now working on editing it and moving it to my cloud instance of Galaxy. I will work on it and let you know how everything progresses. I appreciate your help! Mike   ...
written 3.5 years ago by Law, Michael J.20
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Comment: C: Need help with "SICER" tool
... Thank you Jen for the reply. I am unsure about where to find the repository's "sicer_wrapper.py" file. Is there a path to this somewhere that is obvious and I am just missing it? ...
written 3.5 years ago by Law, Michael J.20
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MACS for ChIP seq of histone modifications in S. cerevisiae
... I am performing ChIP-seq of histone modifications in S. cerevisiae. The trouble occurs when I am using MACS. If I use the correct genome size of 1.2e+7 and almost any value of MFOLD (as low as 3), I don't get any peaks. If the only parameter I change is the genome size to 2.7e+9, I get peaks, albeit ...
chip-seq macs written 3.5 years ago by Law, Michael J.20 • updated 3.5 years ago by Jennifer Hillman Jackson23k
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Need help with "SICER" tool
... How can you add a genome to SICER in Galaxy?     Tool name: SICER Tool version: 0.0.1 Tool ID: toolshed.g2.bx.psu.edu/repos/devteam/sicer/peakcalling_sicer/0.0.1 ToolShed URL: http://toolshed.g2.bx.psu.edu/view/devteam/sicer   ...
sicer add genome written 3.5 years ago by Law, Michael J.20 • updated 3.5 years ago by Jennifer Hillman Jackson23k
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Problem With Bowtie
... Hello, I am completely new to using galaxy. I have a quick question. I have uploaded my fastq files generated from my experiment for alignments using bowtie. I try to set up the alignment, only to receive the error message that I don't have any sequences with ASCII encoded quality scores. However, w ...
bowtie alignment written 4.4 years ago by Law, Michael J.20 • updated 4.4 years ago by Jennifer Hillman Jackson23k
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Genome Not Available On Galaxy
... Hello, I am a new galaxy user and cannot find my reference genome in the drop down menu. I performed my ChIP seq experiments using S. cerevisiae SK1 strain background. Do you have that genome available for my analyses? Please let me know when you get a chance. Thanks, Mike Michael Law lawmj@rowan. ...
galaxy written 4.4 years ago by Law, Michael J.20 • updated 4.4 years ago by Jennifer Hillman Jackson23k

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