User: negin_valizadegan

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Posts by negin_valizadegan

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Comment: C: RNA STAR Gapped-read mapper for RNA-seq data
... Hi Jennifer, I have done this analysis multiple times and each time I got the same error as I got first with the memory issues. I am not sure what is going on. I changed multiple parameters, still doesn't work. TopHat seems to be working but there is a note next to TopHat tool that says it is depre ...
written 5 months ago by negin_valizadegan0
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Answer: A: RNA STAR Gapped-read mapper for RNA-seq data
... Hi Jennifer, I have done this analysis multiple times and each time I got the same error as I got first with the memory issues. I am not sure what is going on. I changed multiple parameters, still doesn't work. TopHat seems to be working but there is a note next to TopHat tool that says it is depre ...
written 5 months ago by negin_valizadegan0
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Answer: A: RNA STAR Gapped-read mapper for RNA-seq data
... Thank you for your reply Jen! I changed one of the parameters of the setting "Filter alignments containing non-canonical junctions" from No to Yes and "Remove alignments with unannotated non-canonical junction" and I didn't get an error this time. Instead, the job has been at "This is a new dataset ...
written 6 months ago by negin_valizadegan0
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RNA STAR Gapped-read mapper for RNA-seq data
... Hello Galaxy team, I am trying to map an RNAseq data to human reference genome using the RNA STAR Gapped-read mapper for RNA-seq data. I keep receiving the error of "This job was terminated because it used more memory than it was allocated." I have only three files on my galaxy and I permanently ...
rnastar rnaseq alignment memory-failure written 6 months ago by negin_valizadegan0

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