User: negin_valizadegan

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3 months, 1 week ago
Joined:
11 months, 2 weeks ago
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n****************@yahoo.com

Posts by negin_valizadegan

<prev • 9 results • page 1 of 1 • next >
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(Closed) Issue with downloading the HISAT files
... Hi, I have issues downloading the bam file of my HISAT analysis on Galaxy. I used to do it a few weeks ago but now I can't. When I click on download the dataset (bam file), it redirects me to a new white page with nothing in it. I can download the bai file, however, but I don't need that. I want to ...
alignment written 3 months ago by negin_valizadegan10
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Answer: A: Issues with importing Galaxy History to another Galaxy server
... The problem still persists. I wish Galaxy had more memory. ...
written 3 months ago by negin_valizadegan10
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Comment: C: Issues with importing Galaxy History to another Galaxy server
... Do I need to update my Galaxy version or would it be updated automatically? Update: Nevermind. I found mine is current. ...
written 3 months ago by negin_valizadegan10
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Comment: C: Issues with importing Galaxy History to another Galaxy server
... Hi Jen, Thank you for your detailed response. Answers to your comments below: 1. My history is accessible. 2. I waited to the archive building to be complete. I used it when it was complete. 3. What do you mean from collections? I am not sure what it means. Dataset names are each different from ...
written 3 months ago by negin_valizadegan10
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Issues with importing Galaxy History to another Galaxy server
... Hi, I ran out of space in Galaxy Main and need to analyze more data, but I don't want to loose my initial data and completely delete it. Since my histories have lots of big files, it is very furstrating to download each file separately. Also, each file has two download options bi and bam and I am n ...
export usegalaxy.org history import written 4 months ago by negin_valizadegan10
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Comment: C: RNA STAR Gapped-read mapper for RNA-seq data
... Hi Jennifer, I have done this analysis multiple times and each time I got the same error as I got first with the memory issues. I am not sure what is going on. I changed multiple parameters, still doesn't work. TopHat seems to be working but there is a note next to TopHat tool that says it is depre ...
written 11 months ago by negin_valizadegan10
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Answer: A: RNA STAR Gapped-read mapper for RNA-seq data
... Hi Jennifer, I have done this analysis multiple times and each time I got the same error as I got first with the memory issues. I am not sure what is going on. I changed multiple parameters, still doesn't work. TopHat seems to be working but there is a note next to TopHat tool that says it is depre ...
written 11 months ago by negin_valizadegan10
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Answer: A: RNA STAR Gapped-read mapper for RNA-seq data
... Thank you for your reply Jen! I changed one of the parameters of the setting "Filter alignments containing non-canonical junctions" from No to Yes and "Remove alignments with unannotated non-canonical junction" and I didn't get an error this time. Instead, the job has been at "This is a new dataset ...
written 11 months ago by negin_valizadegan10
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RNA STAR Gapped-read mapper for RNA-seq data
... Hello Galaxy team, I am trying to map an RNAseq data to human reference genome using the RNA STAR Gapped-read mapper for RNA-seq data. I keep receiving the error of "This job was terminated because it used more memory than it was allocated." I have only three files on my galaxy and I permanently ...
rnastar rnaseq alignment memory-failure written 11 months ago by negin_valizadegan10

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