User: franklin_moreno

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Posts by franklin_moreno

<prev • 5 results • page 1 of 1 • next >
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ERROR WHEN RUNNING AN RNA STYAR ANALYSIS
... Hello all. I´ve tried to run an analysis with RNA STAR but I´ve immediatly got the following error message: "EXITING because of FATAL PARAMETER ERROR: limitGenomeGenerateRAM=31000000000is too small for your genome". The suggested solution is to increase the limitGenomeGenerateRAM, but I haven´t f ...
galaxy software error rna-seq written 14 months ago by franklin_moreno0
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Answer: A: TopHat tool missing?
... Thanks Jenny! I´ve alreday solved the metadata errors. After looking at the tutorial you recommended, I notice that the tool for assessing the quality assembly is not actually among the tools (assemblystats). What other tool could I use for this purpose? Thanks a lot. ...
written 14 months ago by franklin_moreno0
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Answer: A: TopHat tool missing?
... Thanks a lot Jennifer! Sure I´m still waiting.. ...
written 14 months ago by franklin_moreno0
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Answer: A: TopHat tool missing?
... Hi all.. Please, sb tell me... How long is a normal job going to take on HISAT? I´m runing several jobs over HISAT and RNA STAR since jun 4th, but there are no changes in the job status. Before, I ran an assembly on Trinity and it was very fast,, just some hours. Thanks a lot ...
written 14 months ago by franklin_moreno0
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Tophat is not anymore among the galaxy tools
... I have been using tophat to quantify sequences in my RNAseq analysis along this year.. But today, Tophat is not under the RNA analysis tools in Galaxy... Does sb know what happened w/ tophat? Is it in maintainance? Is it going to be included soon? Or.. if not, what other tool should I use to keep th ...
tophat rna-seq written 14 months ago by franklin_moreno0 • updated 14 months ago by Devon Ryan1.9k

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