Moderator: Bjoern Gruening

gravatar for Bjoern Gruening
Bjoern Gruening5.0k
Reputation:
4,970
Status:
Trusted
Location:
Germany
Website:
https://github.com/bgr...
Twitter:
bjoerngruening
Scholar ID:
Google Scholar Page
Last seen:
3 days, 16 hours ago
Joined:
4 years, 8 months ago
Email:
b**************@gmail.com

Posts by Bjoern Gruening

<prev • 717 results • page 2 of 72 • next >
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Answer: A: plotCorrelation and pandas error
... This was fixed upstream. If you remove your conda environment and let Galaxy install a new one this should work. Thanks to Devon for the fix! Bjoern ...
written 5 weeks ago by Bjoern Gruening5.0k
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Comment: C: plotCorrelation and pandas error
... This is using deeptools3 isn't it? ...
written 5 weeks ago by Bjoern Gruening5.0k
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Answer: A: why "PEAR - Paired-End reAd mergeR" this tool disappear from Galaxy?
... The PEAR author contacted me and complained that I'm not allowed to distribute the software. Then they made the license even more restrictive. So we had no other chance then removing the tools. You can use FLASH instead of PEAR which is a very good open source alternative. Ciao, Bjoern ...
written 5 weeks ago by Bjoern Gruening5.0k
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Comment: C: Public DNA methylation server
... Cool, thanks. I think it should be possible to "accept answer" for you. This will hopefully help others. ...
written 5 weeks ago by Bjoern Gruening5.0k
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Answer: A: Privacy of data
... Hi Huiwen, I agree with Martin that if you need to deal with legal issues and patient data for example you are probably not allowed to upload your data to your cloud. But to answer your question a little bit more concrete, uploaded data can not be seen by any other user than yourself. You are the a ...
written 5 weeks ago by Bjoern Gruening5.0k
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Answer: A: Public DNA methylation server
... Hi, the following trainings, including bwa-meth, Methyldackel and metilene should work on https://usegalaxy.eu. http://galaxyproject.github.io/training-material/topics/epigenetics/ Hope that helps, Bjoern ...
written 5 weeks ago by Bjoern Gruening5.0k
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Answer: A: biopython not installed?
... Best way is to contact the RiboTools developers and make them aware of this. An other possibility is to add the biopython dependency to the tool description file as a requirement. This was Galaxy will install the missing dependency. ...
written 8 weeks ago by Bjoern Gruening5.0k
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Comment: C: Workflow jobs not running/queueing on a local Galaxy version 17.09
... Hard to tell then, can you attach a log file for the entire process from launching the job onward. Do you use multiple handlers? An external scheduler? ...
written 12 weeks ago by Bjoern Gruening5.0k
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Comment: C: How to start job on dynamically started openstack hosted pulsar server?
... We have currently not written something up for it. Can you write me a mail and we will see how we can transfer the setup. ...
written 12 weeks ago by Bjoern Gruening5.0k
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Comment: C: Workflow jobs not running/queueing on a local Galaxy version 17.09
... Do you see reoccurring messages in your log about a delayed workflows invocation? ...
written 12 weeks ago by Bjoern Gruening5.0k

Latest awards to Bjoern Gruening

Scholar 9 days ago, created an answer that has been accepted. For A: Featurecounts' added built-in annotations
Scholar 5 weeks ago, created an answer that has been accepted. For A: Adding admin users
Scholar 5 weeks ago, created an answer that has been accepted. For A: Adding admin users
Scholar 8 weeks ago, created an answer that has been accepted. For A: Adding admin users
Popular Question 4 months ago, created a question with more than 1,000 views. For Announcement: Galaxy Docker Images
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: Adding admin users
Popular Question 5 months ago, created a question with more than 1,000 views. For Join The Homer Galaxy Wrapper Development!
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: Adding admin users
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: Adding admin users
Appreciated 9 months ago, created a post with more than 5 votes. For Announcement: Galaxy Docker Images
Popular Question 9 months ago, created a question with more than 1,000 views. For Announcement: Galaxy Docker Images
Popular Question 11 months ago, created a question with more than 1,000 views. For Announcement: Galaxy Docker Images
Teacher 16 months ago, created an answer with at least 3 up-votes. For A: Adding admin users
Appreciated 16 months ago, created a post with more than 5 votes. For A: Deploying galaxy instances using docker
Teacher 16 months ago, created an answer with at least 3 up-votes. For A: Adding admin users
Scholar 16 months ago, created an answer that has been accepted. For A: Adding admin users
Teacher 19 months ago, created an answer with at least 3 up-votes. For A: Galaxy via Docker?
Teacher 19 months ago, created an answer with at least 3 up-votes. For A: Galaxy via Docker?
Appreciated 19 months ago, created a post with more than 5 votes. For A: Deploying galaxy instances using docker
Good Answer 19 months ago, created an answer that was upvoted at least 5 times. For A: Deploying galaxy instances using docker
Teacher 21 months ago, created an answer with at least 3 up-votes. For A: Creating Appropriate Tool Dependencies for Custom Tool in Galaxy
Scholar 21 months ago, created an answer that has been accepted. For A: ngs.plot on use galaxy.org
Teacher 22 months ago, created an answer with at least 3 up-votes. For A: Creating Appropriate Tool Dependencies for Custom Tool in Galaxy
Popular Question 23 months ago, created a question with more than 1,000 views. For Announcement: Galaxy Docker Images
Teacher 23 months ago, created an answer with at least 3 up-votes. For A: ngs.plot on use galaxy.org

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