Moderator: Bjoern Gruening

gravatar for Bjoern Gruening
Bjoern Gruening5.1k
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Germany
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Twitter:
bjoerngruening
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Posts by Bjoern Gruening

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Answer: A: "Get galaxy" site on my computer different from video in Module 5
... If you want to install Galaxy use this site: https://galaxyproject.org/admin/get-galaxy/ An easier way is to use Docker and the Galaxy Docker image: https://github.com/bgruening/docker-galaxy-stable Or you can use one of the many public Galaxy instance, for example usegalaxy.org, usegalaxy.eu or us ...
written 3 months ago by Bjoern Gruening5.1k
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Answer: A: Difficulty installing Galaxy on Windows
... We do not recommend to run Galaxy under Windows, most of the tools are not able to run on Windows and you will have all sorts of problems. If you can use Docker and the Galaxy Docker image instead. ...
written 3 months ago by Bjoern Gruening5.1k
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Answer: A: Addition of Xenopus laevis 9.1 genome to galaxy
... On [usegalaxy.eu][1] we have 9.2 installed for a few tools. We trying to sync ours reference genomes across Galaxy instances, so this will get better in the near future. [1]: https://usegalaxy.eu ...
written 3 months ago by Bjoern Gruening5.1k
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Answer: A: Stacks in Galaxy
... Hi, you can run Stacks on [usegalaxy.eu][1] if you like. Ciao, Bjoern [1]: https://galaxy.uni-freiburg.de/root?tool_id=toolshed.g2.bx.psu.edu/repos/iuc/stacks_populations/stacks_populations/1.46.0 ...
written 3 months ago by Bjoern Gruening5.1k
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Answer: A: Modifying Text in a Column
... You could use [Replace Text in entire line][1] and replace `_` with `\t` and then the [cut tool][2], to extract the first column. [1]: https://usegalaxy.eu/root?tool_id=toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/1.1.1 [2]: https://usegalaxy.eu/root?tool_id=toolsh ...
written 3 months ago by Bjoern Gruening5.1k
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Answer: A: ChIPseq vs RNAseq comparison
... Could you use deeptools for this or https://github.com/deeptools/pyGenomeTracks ? ...
written 3 months ago by Bjoern Gruening5.1k
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Answer: A: Job not running
... Which server are you using? It can be that simply many people are using the service today and it gets faster tomorrow. ...
written 3 months ago by Bjoern Gruening5.1k
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Answer: A: Reserved variable for conda env in XML?
... Hi Asma, we do not have such a variable. Please keep in mind that Conda is just one of many dependency resolvers, and a tool should be written in a way that it is independent of Conda. For example you could run your tool in Docker or Singularity without Conda. What is your concrete use-case? You ...
written 3 months ago by Bjoern Gruening5.1k
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Answer: A: Headers get lost when downloading tabular data
... I don't think there is currently a workaround. But we discussed several times that this should be an option during download. So that Galaxy attaches the metadata to the file. Any contributions welcome - for example where would you put such an option? ...
written 3 months ago by Bjoern Gruening5.1k
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Comment: C: Variants pathogenicity with Galaxy
... Are you using gemini to create the SQL table? ...
written 3 months ago by Bjoern Gruening5.1k

Latest awards to Bjoern Gruening

Scholar 6 months ago, created an answer that has been accepted. For A: Featurecounts' added built-in annotations
Scholar 6 months ago, created an answer that has been accepted. For A: Featurecounts' added built-in annotations
Scholar 7 months ago, created an answer that has been accepted. For A: Adding admin users
Scholar 7 months ago, created an answer that has been accepted. For A: Adding admin users
Scholar 7 months ago, created an answer that has been accepted. For A: Adding admin users
Popular Question 10 months ago, created a question with more than 1,000 views. For Announcement: Galaxy Docker Images
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: Adding admin users
Popular Question 11 months ago, created a question with more than 1,000 views. For Join The Homer Galaxy Wrapper Development!
Teacher 14 months ago, created an answer with at least 3 up-votes. For A: Adding admin users
Teacher 14 months ago, created an answer with at least 3 up-votes. For A: Adding admin users
Appreciated 15 months ago, created a post with more than 5 votes. For Announcement: Galaxy Docker Images
Popular Question 16 months ago, created a question with more than 1,000 views. For Announcement: Galaxy Docker Images
Popular Question 17 months ago, created a question with more than 1,000 views. For Announcement: Galaxy Docker Images
Teacher 22 months ago, created an answer with at least 3 up-votes. For A: Adding admin users
Appreciated 22 months ago, created a post with more than 5 votes. For A: Deploying galaxy instances using docker
Teacher 22 months ago, created an answer with at least 3 up-votes. For A: Adding admin users
Scholar 22 months ago, created an answer that has been accepted. For A: Adding admin users
Teacher 2.1 years ago, created an answer with at least 3 up-votes. For A: Galaxy via Docker?
Teacher 2.1 years ago, created an answer with at least 3 up-votes. For A: Galaxy via Docker?
Appreciated 2.1 years ago, created a post with more than 5 votes. For A: Deploying galaxy instances using docker
Good Answer 2.1 years ago, created an answer that was upvoted at least 5 times. For A: Deploying galaxy instances using docker
Teacher 2.2 years ago, created an answer with at least 3 up-votes. For A: Creating Appropriate Tool Dependencies for Custom Tool in Galaxy
Scholar 2.2 years ago, created an answer that has been accepted. For A: ngs.plot on use galaxy.org
Teacher 2.4 years ago, created an answer with at least 3 up-votes. For A: Creating Appropriate Tool Dependencies for Custom Tool in Galaxy
Popular Question 2.4 years ago, created a question with more than 1,000 views. For Announcement: Galaxy Docker Images

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