Moderator: Bjoern Gruening

gravatar for Bjoern Gruening
Bjoern Gruening5.1k
Reputation:
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Germany
Website:
https://github.com/bgr...
Twitter:
bjoerngruening
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Last seen:
3 hours ago
Joined:
4 years, 11 months ago
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Posts by Bjoern Gruening

<prev • 739 results • page 2 of 74 • next >
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Answer: A: ChIPseq vs RNAseq comparison
... Could you use deeptools for this or https://github.com/deeptools/pyGenomeTracks ? ...
written 12 days ago by Bjoern Gruening5.1k
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Answer: A: Job not running
... Which server are you using? It can be that simply many people are using the service today and it gets faster tomorrow. ...
written 12 days ago by Bjoern Gruening5.1k
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Answer: A: Reserved variable for conda env in XML?
... Hi Asma, we do not have such a variable. Please keep in mind that Conda is just one of many dependency resolvers, and a tool should be written in a way that it is independent of Conda. For example you could run your tool in Docker or Singularity without Conda. What is your concrete use-case? You ...
written 12 days ago by Bjoern Gruening5.1k
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Answer: A: Headers get lost when downloading tabular data
... I don't think there is currently a workaround. But we discussed several times that this should be an option during download. So that Galaxy attaches the metadata to the file. Any contributions welcome - for example where would you put such an option? ...
written 15 days ago by Bjoern Gruening5.1k
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Comment: C: Variants pathogenicity with Galaxy
... Are you using gemini to create the SQL table? ...
written 15 days ago by Bjoern Gruening5.1k
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Comment: C: Space en Europe Galaxy
... Have you reached your quota already? ...
written 15 days ago by Bjoern Gruening5.1k
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Comment: C: RNA Structure memory usage
... Can you point us to the pipeline and the Galaxy server which you are using? ...
written 15 days ago by Bjoern Gruening5.1k
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Answer: A: Local Galaxy error in Create DBKey and Reference Genome
... I would also recommend to not sort with the GATK option. Also try a very tiny genome if you can. It all sounds to me that you are running out of memory. Have you looked at using the CVMFS reference genome, which the community is offering? ...
written 28 days ago by Bjoern Gruening5.1k
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Answer: A: View RNA Structure Prediction Results
... Hi, I do not know the "Iterative Mapping to Get RT Stops to Reactivity Calculation to RNA Structure Prediction" workflow, but if you have a EPS files as output, you can use Galaxy charts module to display the rna_eps filetype with the dot-plot module for example. Which datatype do you have as out ...
written 4 weeks ago by Bjoern Gruening5.1k
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Answer: A: Please put Xenopus laevis genome on Galaxy
... Xenopus laevis should be available at https://usegalaxy.eu. ...
written 10 weeks ago by Bjoern Gruening5.1k

Latest awards to Bjoern Gruening

Scholar 12 weeks ago, created an answer that has been accepted. For A: Featurecounts' added built-in annotations
Scholar 3 months ago, created an answer that has been accepted. For A: Featurecounts' added built-in annotations
Scholar 4 months ago, created an answer that has been accepted. For A: Adding admin users
Scholar 4 months ago, created an answer that has been accepted. For A: Adding admin users
Scholar 4 months ago, created an answer that has been accepted. For A: Adding admin users
Popular Question 7 months ago, created a question with more than 1,000 views. For Announcement: Galaxy Docker Images
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: Adding admin users
Popular Question 8 months ago, created a question with more than 1,000 views. For Join The Homer Galaxy Wrapper Development!
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: Adding admin users
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: Adding admin users
Appreciated 12 months ago, created a post with more than 5 votes. For Announcement: Galaxy Docker Images
Popular Question 12 months ago, created a question with more than 1,000 views. For Announcement: Galaxy Docker Images
Popular Question 14 months ago, created a question with more than 1,000 views. For Announcement: Galaxy Docker Images
Teacher 19 months ago, created an answer with at least 3 up-votes. For A: Adding admin users
Appreciated 19 months ago, created a post with more than 5 votes. For A: Deploying galaxy instances using docker
Teacher 19 months ago, created an answer with at least 3 up-votes. For A: Adding admin users
Scholar 19 months ago, created an answer that has been accepted. For A: Adding admin users
Teacher 22 months ago, created an answer with at least 3 up-votes. For A: Galaxy via Docker?
Teacher 22 months ago, created an answer with at least 3 up-votes. For A: Galaxy via Docker?
Appreciated 22 months ago, created a post with more than 5 votes. For A: Deploying galaxy instances using docker
Good Answer 22 months ago, created an answer that was upvoted at least 5 times. For A: Deploying galaxy instances using docker
Teacher 24 months ago, created an answer with at least 3 up-votes. For A: Creating Appropriate Tool Dependencies for Custom Tool in Galaxy
Scholar 24 months ago, created an answer that has been accepted. For A: ngs.plot on use galaxy.org
Teacher 2.1 years ago, created an answer with at least 3 up-votes. For A: Creating Appropriate Tool Dependencies for Custom Tool in Galaxy
Popular Question 2.2 years ago, created a question with more than 1,000 views. For Announcement: Galaxy Docker Images

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