Moderator: Bjoern Gruening

gravatar for Bjoern Gruening
Bjoern Gruening5.1k
Reputation:
5,090
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Location:
Germany
Website:
https://github.com/bgr...
Twitter:
bjoerngruening
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Google Scholar Page
Last seen:
18 hours ago
Joined:
5 years, 2 months ago
Email:
b**************@gmail.com

Posts by Bjoern Gruening

<prev • 744 results • page 1 of 75 • next >
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Answer: A: How to find out what genomes are supported in Galaxy? (potato?)
... We are planning to use this project for this: https://github.com/bgruening/idc But it's not ready for prime-time, you can tell me what you need and I could install it on usegalaxy.eu ...
written 10 days ago by Bjoern Gruening5.1k
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Answer: A: Kallisto in Galaxy
... Sure :) On usegalaxy.eu: https://usegalaxy.eu/root?tool_id=toolshed.g2.bx.psu.edu/repos/iuc/kallisto_quant/kallisto_quant/0.43.1.3 On usegalaxy.org: https://usegalaxy.org/root?tool_id=toolshed.g2.bx.psu.edu/repos/iuc/kallisto_quant/kallisto_quant/0.43.1.3 Enjoy, Bjoern ...
written 16 days ago by Bjoern Gruening5.1k
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Answer: A: How to find out what genomes are supported in Galaxy? (potato?)
... Hi Ann, Galaxy can support any genome version. It's just a question if the administrator has installed the genome of interest. Also installing a genome can mean different things. A Galaxy instance, for example, can offer the sequence as a FASTA sequence but might be missing the bowtie2 index. What ...
written 16 days ago by Bjoern Gruening5.1k
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Answer: A: How to install program on Galaxy
... You can't install tools for public instances. Only the admin of this instance can do it. If you like you can try on of the other public Galaxy instance. Like https://usegalaxy.eu or https://usegalaxy.org.au. Hope that helps, BJoern ...
written 6 weeks ago by Bjoern Gruening5.1k
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Answer: A: slurm Installation with Galaxy: Error python: error: Couldn't find the specified
... The solution to Mat's problem was to install this version of [slurm-drmaa][1] [1]: https://github.com/natefoo/slurm-drmaa ...
written 7 weeks ago by Bjoern Gruening5.1k
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Comment: C: Addition of Xenopus laevis 9.1 genome to galaxy
... Which Galaxy instance are you using and can you give us a link to the tool please? ...
written 3 months ago by Bjoern Gruening5.1k
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Comment: C: "Get galaxy" site on my computer different from video in Module 5
... You have 250GB of space on usegalaxy.org and usegalaxy.eu, are you uploading more than that? Give usegalaxy.eu a try and let me know if this gives the same error. ...
written 3 months ago by Bjoern Gruening5.1k
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Answer: A: DNA methylation analysis
... Of course! :) Have a look at https://usegalaxy.eu. There is bismark and bwa-meth included. In addition same methylation callers and metilene for differential methylation assesment. You might be also interested in our Training material: http://galaxyproject.github.io/training-material/topics/epigen ...
written 3 months ago by Bjoern Gruening5.1k
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Comment: C: "Get galaxy" site on my computer different from video in Module 5
... Cygwin will not work, sorry. Which Galaxy server have you used and what is not working? ...
written 3 months ago by Bjoern Gruening5.1k
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Comment: C: mapping tools error: "Remote job server indicated a problem running or monitorin
... You are using usegalaxy.org? ...
written 3 months ago by Bjoern Gruening5.1k

Latest awards to Bjoern Gruening

Scholar 6 months ago, created an answer that has been accepted. For A: Featurecounts' added built-in annotations
Scholar 6 months ago, created an answer that has been accepted. For A: Featurecounts' added built-in annotations
Scholar 7 months ago, created an answer that has been accepted. For A: Adding admin users
Scholar 7 months ago, created an answer that has been accepted. For A: Adding admin users
Scholar 8 months ago, created an answer that has been accepted. For A: Adding admin users
Popular Question 10 months ago, created a question with more than 1,000 views. For Announcement: Galaxy Docker Images
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: Adding admin users
Popular Question 11 months ago, created a question with more than 1,000 views. For Join The Homer Galaxy Wrapper Development!
Teacher 14 months ago, created an answer with at least 3 up-votes. For A: Adding admin users
Teacher 15 months ago, created an answer with at least 3 up-votes. For A: Adding admin users
Appreciated 15 months ago, created a post with more than 5 votes. For Announcement: Galaxy Docker Images
Popular Question 16 months ago, created a question with more than 1,000 views. For Announcement: Galaxy Docker Images
Popular Question 17 months ago, created a question with more than 1,000 views. For Announcement: Galaxy Docker Images
Teacher 22 months ago, created an answer with at least 3 up-votes. For A: Adding admin users
Appreciated 22 months ago, created a post with more than 5 votes. For A: Deploying galaxy instances using docker
Teacher 22 months ago, created an answer with at least 3 up-votes. For A: Adding admin users
Scholar 22 months ago, created an answer that has been accepted. For A: Adding admin users
Teacher 2.1 years ago, created an answer with at least 3 up-votes. For A: Galaxy via Docker?
Teacher 2.1 years ago, created an answer with at least 3 up-votes. For A: Galaxy via Docker?
Appreciated 2.1 years ago, created a post with more than 5 votes. For A: Deploying galaxy instances using docker
Good Answer 2.1 years ago, created an answer that was upvoted at least 5 times. For A: Deploying galaxy instances using docker
Teacher 2.2 years ago, created an answer with at least 3 up-votes. For A: Creating Appropriate Tool Dependencies for Custom Tool in Galaxy
Scholar 2.2 years ago, created an answer that has been accepted. For A: ngs.plot on use galaxy.org
Teacher 2.4 years ago, created an answer with at least 3 up-votes. For A: Creating Appropriate Tool Dependencies for Custom Tool in Galaxy
Popular Question 2.4 years ago, created a question with more than 1,000 views. For Announcement: Galaxy Docker Images

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