Moderator: Bjoern Gruening

gravatar for Bjoern Gruening
Bjoern Gruening5.1k
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Germany
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bjoerngruening
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Last seen:
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Posts by Bjoern Gruening

<prev • 739 results • page 1 of 74 • next >
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Comment: C: Addition of Xenopus laevis 9.1 genome to galaxy
... Which Galaxy instance are you using and can you give us a link to the tool please? ...
written 5 weeks ago by Bjoern Gruening5.1k
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Comment: C: "Get galaxy" site on my computer different from video in Module 5
... You have 250GB of space on usegalaxy.org and usegalaxy.eu, are you uploading more than that? Give usegalaxy.eu a try and let me know if this gives the same error. ...
written 6 weeks ago by Bjoern Gruening5.1k
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Answer: A: DNA methylation analysis
... Of course! :) Have a look at https://usegalaxy.eu. There is bismark and bwa-meth included. In addition same methylation callers and metilene for differential methylation assesment. You might be also interested in our Training material: http://galaxyproject.github.io/training-material/topics/epigen ...
written 6 weeks ago by Bjoern Gruening5.1k
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Comment: C: "Get galaxy" site on my computer different from video in Module 5
... Cygwin will not work, sorry. Which Galaxy server have you used and what is not working? ...
written 6 weeks ago by Bjoern Gruening5.1k
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Comment: C: mapping tools error: "Remote job server indicated a problem running or monitorin
... You are using usegalaxy.org? ...
written 6 weeks ago by Bjoern Gruening5.1k
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Answer: A: "Get galaxy" site on my computer different from video in Module 5
... If you want to install Galaxy use this site: https://galaxyproject.org/admin/get-galaxy/ An easier way is to use Docker and the Galaxy Docker image: https://github.com/bgruening/docker-galaxy-stable Or you can use one of the many public Galaxy instance, for example usegalaxy.org, usegalaxy.eu or us ...
written 6 weeks ago by Bjoern Gruening5.1k
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Answer: A: Difficulty installing Galaxy on Windows
... We do not recommend to run Galaxy under Windows, most of the tools are not able to run on Windows and you will have all sorts of problems. If you can use Docker and the Galaxy Docker image instead. ...
written 6 weeks ago by Bjoern Gruening5.1k
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Answer: A: Addition of Xenopus laevis 9.1 genome to galaxy
... On [usegalaxy.eu][1] we have 9.2 installed for a few tools. We trying to sync ours reference genomes across Galaxy instances, so this will get better in the near future. [1]: https://usegalaxy.eu ...
written 6 weeks ago by Bjoern Gruening5.1k
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Answer: A: Stacks in Galaxy
... Hi, you can run Stacks on [usegalaxy.eu][1] if you like. Ciao, Bjoern [1]: https://galaxy.uni-freiburg.de/root?tool_id=toolshed.g2.bx.psu.edu/repos/iuc/stacks_populations/stacks_populations/1.46.0 ...
written 6 weeks ago by Bjoern Gruening5.1k
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Answer: A: Modifying Text in a Column
... You could use [Replace Text in entire line][1] and replace `_` with `\t` and then the [cut tool][2], to extract the first column. [1]: https://usegalaxy.eu/root?tool_id=toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/1.1.1 [2]: https://usegalaxy.eu/root?tool_id=toolsh ...
written 6 weeks ago by Bjoern Gruening5.1k

Latest awards to Bjoern Gruening

Scholar 4 months ago, created an answer that has been accepted. For A: Featurecounts' added built-in annotations
Scholar 4 months ago, created an answer that has been accepted. For A: Featurecounts' added built-in annotations
Scholar 5 months ago, created an answer that has been accepted. For A: Adding admin users
Scholar 5 months ago, created an answer that has been accepted. For A: Adding admin users
Scholar 6 months ago, created an answer that has been accepted. For A: Adding admin users
Popular Question 8 months ago, created a question with more than 1,000 views. For Announcement: Galaxy Docker Images
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: Adding admin users
Popular Question 9 months ago, created a question with more than 1,000 views. For Join The Homer Galaxy Wrapper Development!
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: Adding admin users
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: Adding admin users
Appreciated 13 months ago, created a post with more than 5 votes. For Announcement: Galaxy Docker Images
Popular Question 14 months ago, created a question with more than 1,000 views. For Announcement: Galaxy Docker Images
Popular Question 15 months ago, created a question with more than 1,000 views. For Announcement: Galaxy Docker Images
Teacher 20 months ago, created an answer with at least 3 up-votes. For A: Adding admin users
Appreciated 20 months ago, created a post with more than 5 votes. For A: Deploying galaxy instances using docker
Teacher 20 months ago, created an answer with at least 3 up-votes. For A: Adding admin users
Scholar 20 months ago, created an answer that has been accepted. For A: Adding admin users
Teacher 23 months ago, created an answer with at least 3 up-votes. For A: Galaxy via Docker?
Teacher 23 months ago, created an answer with at least 3 up-votes. For A: Galaxy via Docker?
Appreciated 23 months ago, created a post with more than 5 votes. For A: Deploying galaxy instances using docker
Good Answer 23 months ago, created an answer that was upvoted at least 5 times. For A: Deploying galaxy instances using docker
Teacher 2.1 years ago, created an answer with at least 3 up-votes. For A: Creating Appropriate Tool Dependencies for Custom Tool in Galaxy
Scholar 2.1 years ago, created an answer that has been accepted. For A: ngs.plot on use galaxy.org
Teacher 2.2 years ago, created an answer with at least 3 up-votes. For A: Creating Appropriate Tool Dependencies for Custom Tool in Galaxy
Popular Question 2.3 years ago, created a question with more than 1,000 views. For Announcement: Galaxy Docker Images

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