Moderator: Bjoern Gruening

gravatar for Bjoern Gruening
Bjoern Gruening4.7k
Reputation:
4,730
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Trusted
Location:
Germany
Website:
https://github.com/bgr...
Twitter:
bjoerngruening
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Google Scholar Page
Last seen:
3 hours ago
Joined:
4 years, 2 months ago
Email:
b**************@gmail.com

Posts by Bjoern Gruening

<prev • 688 results • page 1 of 69 • next >
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Answer: C: Installing Gemini tools
... Hi, can you post the conda error which you get? ...
written 9 days ago by Bjoern Gruening4.7k
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Answer: A: How to insert > symbol in value
... Hi, please have a look at "sanatizers" https://docs.galaxyproject.org/en/latest/dev/schema.html#tool-inputs-param-sanitizer. These will make sure a user can not pass arbitrary characters into your program. For an example please see here: https://github.com/bgruening/galaxytools/blob/master/tools ...
written 4 weeks ago by Bjoern Gruening4.7k
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Comment: C: Using DESeq2 inside Galaxy
... Hi, sorry for the broken link I moved this repository over to the main Galaxy organisation! https://galaxyproject.github.io/training-material/ ...
written 5 weeks ago by Bjoern Gruening4.7k
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Comment: C: RNA Structure (in silico) prediction
... Which tool have you used or which Galaxy instance? ...
written 9 weeks ago by Bjoern Gruening4.7k
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Answer: A: A server for conservation genomics
... Hi Tiago, such questions are really hard to answer as you can run such a service with just 100 cores and then people need to wait a little bit longer or you can easily add a few hundreds more to reduce the wait time. I would say BWA or BWA-mem should be finished in a few hours given 4 cores. 4 core ...
written 9 weeks ago by Bjoern Gruening4.7k
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Answer: A: A minimal galaxy server needed
... You can also use the Galaxy Docker image, a production ready Docker instance with Galaxy and all other components included. http://bgruening.github.io/docker-galaxy-stable/ P.S. What means Galaxy is slow? Are you referring to usegalaxy.org? ...
written 10 weeks ago by Bjoern Gruening4.7k
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Answer: A: tool integration with planemo
... Hi, can I recommend to use the https://testtoolshed.g2.bx.psu.edu or the main toolshed. You need to configure the local toolshed properly with a user and then configure planemo to use it etc... Ciao, Bjoern ...
written 12 weeks ago by Bjoern Gruening4.7k
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Comment: C: Error installing own tool on a Galaxy Docker instance
... So you run Galaxy Docker with Docker containers and it works? Awesome! Let us know if anything was problematic in our documentation! Thanks. ...
written 3 months ago by Bjoern Gruening4.7k
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Comment: C: TS dependencies install will conda doesn't work on galaxy Docker
... You don't need to change anything in your galaxy.ini it should work out of the box. Can you verify that this also happens to other tools? I just checked with bgruening/galaxy-stable:17.05 and this works for me. ...
written 3 months ago by Bjoern Gruening4.7k
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Comment: C: install dependencies over conda
... Can you give us a outline what you have done? Essentially, you need to check that Conda is enabled in galaxy.ini, that during install you check a checkbox to install conda dependencies or enable conda_auto_install. ...
written 3 months ago by Bjoern Gruening4.7k

Latest awards to Bjoern Gruening

Teacher 9 weeks ago, created an answer with at least 3 up-votes. For A: Adding admin users
Teacher 11 weeks ago, created an answer with at least 3 up-votes. For A: Adding admin users
Appreciated 3 months ago, created a post with more than 5 votes. For Announcement: Galaxy Docker Images
Popular Question 3 months ago, created a question with more than 1,000 views. For Announcement: Galaxy Docker Images
Popular Question 5 months ago, created a question with more than 1,000 views. For Announcement: Galaxy Docker Images
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: Adding admin users
Appreciated 10 months ago, created a post with more than 5 votes. For A: Deploying galaxy instances using docker
Scholar 10 months ago, created an answer that has been accepted. For A: Adding admin users
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: Adding admin users
Teacher 13 months ago, created an answer with at least 3 up-votes. For A: Galaxy via Docker?
Teacher 13 months ago, created an answer with at least 3 up-votes. For A: Galaxy via Docker?
Appreciated 13 months ago, created a post with more than 5 votes. For A: Deploying galaxy instances using docker
Good Answer 13 months ago, created an answer that was upvoted at least 5 times. For A: Deploying galaxy instances using docker
Teacher 15 months ago, created an answer with at least 3 up-votes. For A: Creating Appropriate Tool Dependencies for Custom Tool in Galaxy
Scholar 15 months ago, created an answer that has been accepted. For A: ngs.plot on use galaxy.org
Teacher 16 months ago, created an answer with at least 3 up-votes. For A: Creating Appropriate Tool Dependencies for Custom Tool in Galaxy
Popular Question 17 months ago, created a question with more than 1,000 views. For Announcement: Galaxy Docker Images
Teacher 17 months ago, created an answer with at least 3 up-votes. For A: ngs.plot on use galaxy.org
Teacher 17 months ago, created an answer with at least 3 up-votes. For A: ngs.plot on use galaxy.org
Scholar 17 months ago, created an answer that has been accepted. For A: ngs.plot on use galaxy.org
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Teacher 19 months ago, created an answer with at least 3 up-votes. For A: ngs.plot on use galaxy.org
Teacher 19 months ago, created an answer with at least 3 up-votes. For A: ngs.plot on use galaxy.org
Scholar 19 months ago, created an answer that has been accepted. For A: ngs.plot on use galaxy.org

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