Moderator: Bjoern Gruening

gravatar for Bjoern Gruening
Bjoern Gruening4.8k
Reputation:
4,810
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Location:
Germany
Website:
https://github.com/bgr...
Twitter:
bjoerngruening
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Google Scholar Page
Last seen:
1 week, 1 day ago
Joined:
4 years, 4 months ago
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Posts by Bjoern Gruening

<prev • 692 results • page 1 of 70 • next >
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News: Galaxy Docker release 17.09
... Galaxy Docker 17.09 is now available as *bruening/galaxy-stable:17.09* or *quay.io/bruening/galaxy:17.09*! As usual it include the Galaxy release from last week with many, many new [feature and bug-fixes][1]. In addition we added the following to the latest release: - much improved documentatio ...
docker galaxy news written 5 weeks ago by Bjoern Gruening4.8k
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Comment: C: Installing Gemini tools
... Don't install the old packages anymore. Try to use Galaxy build in conda resolver to install gemini if possible. Please see here for more information: https://docs.galaxyproject.org/en/master/admin/conda_faq.html ...
written 5 weeks ago by Bjoern Gruening4.8k
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Answer: A: Concatenate datasets tail-to-head with and without the (cat)
... The only difference is in the implementation and the user interface. Both should do the job. The one with cat in it should be more performant. ...
written 6 weeks ago by Bjoern Gruening4.8k
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Answer: A: Get Count of lines in a BED data file
... Hi. You can try the word-count tool or the datamash tools. Both are counting or summarizing columns. Cheers, Bjoern ...
written 7 weeks ago by Bjoern Gruening4.8k
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Answer: C: Installing Gemini tools
... Hi, can you post the conda error which you get? ...
written 9 weeks ago by Bjoern Gruening4.8k
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Answer: A: How to insert > symbol in value
... Hi, please have a look at "sanatizers" https://docs.galaxyproject.org/en/latest/dev/schema.html#tool-inputs-param-sanitizer. These will make sure a user can not pass arbitrary characters into your program. For an example please see here: https://github.com/bgruening/galaxytools/blob/master/tools ...
written 3 months ago by Bjoern Gruening4.8k
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Comment: C: Using DESeq2 inside Galaxy
... Hi, sorry for the broken link I moved this repository over to the main Galaxy organisation! https://galaxyproject.github.io/training-material/ ...
written 3 months ago by Bjoern Gruening4.8k
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Comment: C: RNA Structure (in silico) prediction
... Which tool have you used or which Galaxy instance? ...
written 4 months ago by Bjoern Gruening4.8k
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Answer: A: A server for conservation genomics
... Hi Tiago, such questions are really hard to answer as you can run such a service with just 100 cores and then people need to wait a little bit longer or you can easily add a few hundreds more to reduce the wait time. I would say BWA or BWA-mem should be finished in a few hours given 4 cores. 4 core ...
written 4 months ago by Bjoern Gruening4.8k
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Answer: A: A minimal galaxy server needed
... You can also use the Galaxy Docker image, a production ready Docker instance with Galaxy and all other components included. http://bgruening.github.io/docker-galaxy-stable/ P.S. What means Galaxy is slow? Are you referring to usegalaxy.org? ...
written 4 months ago by Bjoern Gruening4.8k

Latest awards to Bjoern Gruening

Popular Question 11 days ago, created a question with more than 1,000 views. For Announcement: Galaxy Docker Images
Teacher 14 days ago, created an answer with at least 3 up-votes. For A: Adding admin users
Popular Question 25 days ago, created a question with more than 1,000 views. For Join The Homer Galaxy Wrapper Development!
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: Adding admin users
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: Adding admin users
Appreciated 5 months ago, created a post with more than 5 votes. For Announcement: Galaxy Docker Images
Popular Question 5 months ago, created a question with more than 1,000 views. For Announcement: Galaxy Docker Images
Popular Question 7 months ago, created a question with more than 1,000 views. For Announcement: Galaxy Docker Images
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: Adding admin users
Appreciated 12 months ago, created a post with more than 5 votes. For A: Deploying galaxy instances using docker
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: Adding admin users
Scholar 12 months ago, created an answer that has been accepted. For A: Adding admin users
Teacher 15 months ago, created an answer with at least 3 up-votes. For A: Galaxy via Docker?
Teacher 15 months ago, created an answer with at least 3 up-votes. For A: Galaxy via Docker?
Appreciated 15 months ago, created a post with more than 5 votes. For A: Deploying galaxy instances using docker
Good Answer 15 months ago, created an answer that was upvoted at least 5 times. For A: Deploying galaxy instances using docker
Teacher 16 months ago, created an answer with at least 3 up-votes. For A: Creating Appropriate Tool Dependencies for Custom Tool in Galaxy
Scholar 16 months ago, created an answer that has been accepted. For A: ngs.plot on use galaxy.org
Teacher 18 months ago, created an answer with at least 3 up-votes. For A: Creating Appropriate Tool Dependencies for Custom Tool in Galaxy
Popular Question 19 months ago, created a question with more than 1,000 views. For Announcement: Galaxy Docker Images
Teacher 19 months ago, created an answer with at least 3 up-votes. For A: ngs.plot on use galaxy.org
Teacher 19 months ago, created an answer with at least 3 up-votes. For A: ngs.plot on use galaxy.org
Scholar 19 months ago, created an answer that has been accepted. For A: ngs.plot on use galaxy.org
Scholar 20 months ago, created an answer that has been accepted. For A: ngs.plot on use galaxy.org
Scholar 21 months ago, created an answer that has been accepted. For A: ngs.plot on use galaxy.org

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