Moderator: Bjoern Gruening

gravatar for Bjoern Gruening
Bjoern Gruening4.8k
Reputation:
4,850
Status:
Trusted
Location:
Germany
Website:
https://github.com/bgr...
Twitter:
bjoerngruening
Scholar ID:
Google Scholar Page
Last seen:
3 weeks, 2 days ago
Joined:
4 years, 6 months ago
Email:
b**************@gmail.com

Posts by Bjoern Gruening

<prev • 700 results • page 1 of 70 • next >
0
votes
0
answers
149
views
0
answers
Comment: C: Workflow jobs not running/queueing on a local Galaxy version 17.09
... Hard to tell then, can you attach a log file for the entire process from launching the job onward. Do you use multiple handlers? An external scheduler? ...
written 25 days ago by Bjoern Gruening4.8k
0
votes
1
answer
86
views
1
answers
Comment: C: How to start job on dynamically started openstack hosted pulsar server?
... We have currently not written something up for it. Can you write me a mail and we will see how we can transfer the setup. ...
written 25 days ago by Bjoern Gruening4.8k
0
votes
0
answers
149
views
0
answers
Comment: C: Workflow jobs not running/queueing on a local Galaxy version 17.09
... Do you see reoccurring messages in your log about a delayed workflows invocation? ...
written 28 days ago by Bjoern Gruening4.8k
0
votes
2
answers
89
views
2
answers
Answer: C: Galaxy stalled at startup when "Loading tool panel finished"
... Can you check if some other processes are running? After you killed supervisord are there still python processes running? ...
written 28 days ago by Bjoern Gruening4.8k
0
votes
1
answer
86
views
1
answers
Answer: C: How to start job on dynamically started openstack hosted pulsar server?
... With `start openstack server with pulsar running on it` do you mean starting a VM in OpenStack? If so we have a pretty similar setup up and running in Freiburg. ...
written 28 days ago by Bjoern Gruening4.8k
2
votes
1
answer
92
views
1
answers
Answer: A: Out Of Disk Space with Picard's FastqtoSam Tools from Galaxy
... I think a better way is to set this as part of the job_conf and point it to a fast, local, big scratch space. For example you can export `_JAVA_OPTIONS=" -XX:MaxPermSize=2G -Xmx8G -Xms1G -Djava.io.tmpdir=/data/2/galaxy_db/tmp"` or set it as variable in your `job_conf.xml` file [like here][1] . Hope ...
written 28 days ago by Bjoern Gruening4.8k
1
vote
1
answer
54
views
1
answers
Answer: A: MapAlignerPoseClustering on Galaxy
... Hi Karolina, I added this tool to the OpenMS suite. Happy research! Bjoern ...
written 5 weeks ago by Bjoern Gruening4.8k
1
vote
1
answer
81
views
1
answers
Answer: A: Galaxy for research on materials
... Hi Francieli, we do have a Galaxy flavor for [Constructive Solid Geometry][1] and we do have a bunch of tools for [image analysis][2]. Let me know if this fits to your research and don't hesitate to contact me. I can bring you in contact with other people interested in image analysis and material r ...
written 7 weeks ago by Bjoern Gruening4.8k
4
votes
0
answers
133
views
0
answers
News: Galaxy Docker release 17.09
... Galaxy Docker 17.09 is now available as *bruening/galaxy-stable:17.09* or *quay.io/bruening/galaxy:17.09*! As usual it include the Galaxy release from last week with many, many new [feature and bug-fixes][1]. In addition we added the following to the latest release: - much improved documentatio ...
docker galaxy news written 3 months ago by Bjoern Gruening4.8k
0
votes
1
answer
191
views
1
answers
Comment: C: Installing Gemini tools
... Don't install the old packages anymore. Try to use Galaxy build in conda resolver to install gemini if possible. Please see here for more information: https://docs.galaxyproject.org/en/master/admin/conda_faq.html ...
written 3 months ago by Bjoern Gruening4.8k

Latest awards to Bjoern Gruening

Popular Question 11 weeks ago, created a question with more than 1,000 views. For Announcement: Galaxy Docker Images
Teacher 11 weeks ago, created an answer with at least 3 up-votes. For A: Adding admin users
Popular Question 3 months ago, created a question with more than 1,000 views. For Join The Homer Galaxy Wrapper Development!
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: Adding admin users
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: Adding admin users
Appreciated 7 months ago, created a post with more than 5 votes. For Announcement: Galaxy Docker Images
Popular Question 7 months ago, created a question with more than 1,000 views. For Announcement: Galaxy Docker Images
Popular Question 9 months ago, created a question with more than 1,000 views. For Announcement: Galaxy Docker Images
Teacher 14 months ago, created an answer with at least 3 up-votes. For A: Adding admin users
Appreciated 14 months ago, created a post with more than 5 votes. For A: Deploying galaxy instances using docker
Teacher 14 months ago, created an answer with at least 3 up-votes. For A: Adding admin users
Scholar 14 months ago, created an answer that has been accepted. For A: Adding admin users
Teacher 17 months ago, created an answer with at least 3 up-votes. For A: Galaxy via Docker?
Teacher 17 months ago, created an answer with at least 3 up-votes. For A: Galaxy via Docker?
Appreciated 17 months ago, created a post with more than 5 votes. For A: Deploying galaxy instances using docker
Good Answer 17 months ago, created an answer that was upvoted at least 5 times. For A: Deploying galaxy instances using docker
Teacher 19 months ago, created an answer with at least 3 up-votes. For A: Creating Appropriate Tool Dependencies for Custom Tool in Galaxy
Scholar 19 months ago, created an answer that has been accepted. For A: ngs.plot on use galaxy.org
Teacher 20 months ago, created an answer with at least 3 up-votes. For A: Creating Appropriate Tool Dependencies for Custom Tool in Galaxy
Popular Question 21 months ago, created a question with more than 1,000 views. For Announcement: Galaxy Docker Images
Teacher 21 months ago, created an answer with at least 3 up-votes. For A: ngs.plot on use galaxy.org
Teacher 21 months ago, created an answer with at least 3 up-votes. For A: ngs.plot on use galaxy.org
Scholar 22 months ago, created an answer that has been accepted. For A: ngs.plot on use galaxy.org
Scholar 22 months ago, created an answer that has been accepted. For A: ngs.plot on use galaxy.org
Scholar 23 months ago, created an answer that has been accepted. For A: ngs.plot on use galaxy.org

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 72 users visited in the last hour