User: mayurdoke

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mayurdoke0
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Posts by mayurdoke

<prev • 14 results • page 1 of 2 • next >
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How to find out that Chip-seq peaks falls within promoter or enhancer region of gene?
... Hello, I have got the peaks and their corresponding peak regions from MACS2 peak analysis tools. I would like to know further that how can I check whether these peaks fall into enhancer or promoter region of the gene. Could you please let me know any particular software and tools available for it. ...
chip-seq written 3 months ago by mayurdoke0 • updated 3 months ago by Jennifer Hillman Jackson23k
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Answer: A: Motif discovery-Chip seq
... Thank you very much for your help !!!!!!!! ...
written 4 months ago by mayurdoke0
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Motif discovery-Chip seq
... Hello, I am analyzing ChIP-Seq data from Illumina using Galaxy web server. I mapped the reads with bowtie2 tool and did the peak calling with MACS2. The next thing I did is to annotate the peaks with genomic regions i.e. promoter, intergenic, intron etc and gene names. The output looks like picture ...
chip-seq written 4 months ago by mayurdoke0
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how to convert gene.id to gene name
... Hello, How to convert geneid to gene name. Is there any tool or website available? My data looks like this- ![enter image description here][1] [1]: https://i.imgur.com/038rip4.jpg ...
chip-seq written 6 months ago by mayurdoke0 • updated 6 months ago by Jennifer Hillman Jackson23k
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how to analyze gene expression and Chip-seq data in Galaxy
... Hello Jennifer, As per your suggestion, I am going to install Galaxy local and RNACHIPintegrator tool on my computer. Will be the display or interface of a local galaxy as same as Public galaxy server? I have another question regarding gene expression. How can I determine the up and down regulatio ...
chip-seq written 6 months ago by mayurdoke0 • updated 6 months ago by Jennifer Hillman Jackson23k
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Answer: A: how to analyze gene against peak data in galaxy
... Hello, As per your suggestion, I am going to install Galaxy local and RNACHIPintegrator tool on my computer. Will be the display or interface of a local galaxy as same as Public galaxy server? I have another question regarding gene expression. How can I determine the up and down regulation of gene ...
written 6 months ago by mayurdoke0
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how to analyze gene against peak data in galaxy
... I am analysing ChIP-Seq data from Illumina using Galaxy web server. I mapped the reads with bowtie and did the peak calling with Macs. The next thing I wanted to do is to annotate the peaks with genomic regions i.e. promoter, intergenic, intron etc and gene names. I have seen YouTube video where the ...
chip-seq written 6 months ago by mayurdoke0
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Answer: A: CEAS for Chip region annotation
... Thank you very much, Jen !!!!!!!!! ...
written 6 months ago by mayurdoke0
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CEAS for Chip region annotation
... Hello, I want to use a tool similar to CEAS for Chip region annotation and gene- centered annotation. But I could not find CEAS tool. Can you please help me to find a tool similar to CEAS. Thank you. ...
chip-seq written 6 months ago by mayurdoke0
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Answer: A: How to visualize the data
... Thanks a lot for your help. ...
written 6 months ago by mayurdoke0

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