User: j.gonzalez10

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Posts by j.gonzalez10

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Comment: C: HELP! My HT seq table counts are in zero
... Thank you Devon!!! That was the most adequate solution!!! ...
written 6 months ago by j.gonzalez100
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Comment: C: HELP! My HT seq table counts are in zero
... Thank you very much! That was indeed the problem. ...
written 6 months ago by j.gonzalez100
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Comment: C: HELP! My HT seq table counts are in zero
... Thanks! First seven of the SAM file: @HD VN:1.0 SO:unsorted @SQ SN:NW_003302556.1 LN:4850 @SQ SN:NW_003302557.1 LN:5561 @SQ SN:NW_003302558.1 LN:4798 @SQ SN:NW_003302559.1 LN:40370 @SQ SN:NW_003302560.1 LN:4805 @SQ SN:NW_003302561.1 LN:5155 First seven of the GTF file: ...
written 6 months ago by j.gonzalez100
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HELP! My HT seq table counts are in zero
... Hello!! I am running HT seq using my sam files (obtained from bowtie) and the gtf file I obtained from Ensemble for Phytophthora infestans. Everything is ok except that I am obtaining zero counts on my HTseq output. I have read in other post that it may be because my gtf file uses different identif ...
htseq rna-seq alignment genome-mismatch written 6 months ago by j.gonzalez100 • updated 6 months ago by Jennifer Hillman Jackson23k

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