User: Beatriz Ramos

gravatar for Beatriz Ramos
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Posts by Beatriz Ramos

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Answer: A: Differential expression from FPKM
... Thank you, I already managed to make room for all my data. Can anyone tell what is the best way to do the differential expression analysis I want, knowing that I have both TopHat and HISAT outputs to combine? ...
written 13 months ago by Beatriz Ramos10
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Differential expression from FPKM
... Greetings, I've been using some of galaxy tools for the last months, namely for tuxedo pipeline. I have a great amount of data so I can't leave it all on my Galaxy page to use tools like DESeq2 or even cummeRbund. Is there a way I can run any of these on R with my csv file that compiles all FPKM val ...
fpkm differential expression rna-seq written 13 months ago by Beatriz Ramos10
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Comment: A: galaxy is not working
... Hi, I have been through the same for the last 24h approximately. In my case, TopHat and Cufflinks are not running. Do you know any way to solve it? thanks ...
written 15 months ago by Beatriz Ramos10
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Tophat vs HISAT
... Hi, I've been using Tophat to align RNA-seq reads followed by Cufflinks to estimate FPKM. Now that Tophat is out of the tools list, what is the main difference between using Tophat and HISAT? ...
cufflinks tophat rna-seq written 16 months ago by Beatriz Ramos10 • updated 16 months ago by Jennifer Hillman Jackson25k

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Popular Question 12 months ago, created a question with more than 1,000 views. For Tophat vs HISAT

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