User: mohammedtleis

Reputation:
0
Status:
New User
Location:
Last seen:
2 months ago
Joined:
2 months, 1 week ago
Email:
m************@hotmail.com

Posts by mohammedtleis

<prev • 4 results • page 1 of 1 • next >
2
votes
1
answer
69
views
1
answer
TopHat Error stating that (installed) Bowtie2 is not installed
... I tried to try 'TopHat (v.2.1.0)' locally to align some RNA-Seq data to a reference human genome. The tools execution has failed stating that bowtie 2 is not found. However, Bowtie2 (v.2.3.0.1) is installed and I can verify it in my local tool shed (revision 937aa69e715f). Here is the error after ...
0
votes
1
answer
73
views
1
answer
Getting an error when trying to align sequence data with bowtie2
... On a local instance of galaxy, I created a reference gnome and tried to use 'bowtie2' to align some sequence data with the reference gnome. After waiting for hours, I got the following error: Traceback (most recent call last): File "/Users/tleis/GitHub/galaxy/galaxy/lib/galaxy/jobs/runners/l ...
chip-seq galaxy alignment written 9 weeks ago by mohammedtleis0 • updated 9 weeks ago by Jennifer Hillman Jackson22k
0
votes
1
answer
112
views
1
answers
Comment: C: How to create a Fasta file of mouse genome from download chromosome files
... Thank you Devon for your answer, I find it so helpful. Now I have three questions/issues: 1. Does it matter in what order the files are combined? Would bowtie2 be able to automatically locate the corresponding information throughout the file? In case the order is important where should be the unkno ...
written 9 weeks ago by mohammedtleis0
1
vote
1
answer
112
views
1
answer
How to create a Fasta file of mouse genome from download chromosome files
... Dear Biostar members, My intention is to create a genome reference of the mouse (mm10) to be used within bowtie2. So far, I downloaded the fa files and have the files listed below after my question. Now I need to combine the files into one fa file to be used as reference genome for bowtie2. My qu ...
chip-seq galaxy written 9 weeks ago by mohammedtleis0 • updated 9 weeks ago by Devon Ryan1.6k

Latest awards to mohammedtleis

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 55 users visited in the last hour