User: Larry Simpson

gravatar for Larry Simpson
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30
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Last seen:
4 years, 7 months ago
Joined:
5 years, 1 month ago
Email:
l*********@gmail.com

Posts by Larry Simpson

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... Hi I have a question about the use of BedTools in Galaxy. I am trying to obtain a graph or table of the number of RNA reads mapped to different locations on my custom genome. When I try running "Create a Bedgraph of Genome Coverage" it requires selection of the "Genome Build" from a dropdown list. ...
bedtools written 4.6 years ago by Larry Simpson30 • updated 4.6 years ago by Bjoern Gruening5.1k
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Question
... Hi Is it possible to trim a variable number of a specific nucleotide from the 3' ends of fastq RNA reads? The "Manipulate Fastq" utility in Galaxy may have this ability but I do not know how to create a custom inquiry. Thanks in advance for any assistance. Larry ...
galaxy written 5.1 years ago by Larry Simpson30 • updated 5.0 years ago by Jennifer Hillman Jackson25k
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How To Process Paired Reads In Galaxy
... Hi Users How do I process paired reads from an Ilumina Miseq platform? If I first use "Groomer" and then "Filter by quality", the paired reads get out of sync. I read some responses to similar questions in this Forum that the paired reads must first be "joined" before filtering and then split for ...
galaxy written 5.1 years ago by Larry Simpson30 • updated 5.0 years ago by Jennifer Hillman Jackson25k

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