User: Pieter Neerincx

gravatar for Pieter Neerincx
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Last seen:
7 years, 8 months ago
Joined:
9 years, 4 months ago
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p**************@gmail.com

Posts by Pieter Neerincx

<prev • 36 results • page 1 of 4 • next >
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Comment: C: Upload File Size And User Authorization
... Hi Paul, In your defense: I couldn't find it back myself at first; it's not always easy to find what you are looking for on the wiki... Well, the upload shouldn't be a problem at all, but making sure your server(s) don't run out of disk space in no time can be quite problematic with NGS data :o ...
written 7.7 years ago by Pieter Neerincx360
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Answer: A: Upload File Size And User Authorization
... Hi Paul, Large files are no problem and you may use an FTP site. Depending how much bandwidth you have it may take some time though to move large files around. Please see: https://bitbucket.org/galaxy/galaxy- central/wiki/Config/ProductionServer for details on how to optimize uploads. D ...
written 7.7 years ago by Pieter Neerincx360
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Comment: C: 2011 Galaxy Community Conference, May 25-26, Lunteren, The Netherlands
... Hi Peter and Dave, I'm not from NBIC, but I'm in the Netherlands and familiar with the conference site. The suggested travel plan via Amsterdam Schiphol airport (AMS) followed by a train to Lunteren is your best bet. Occasionally you may find cheap flights to Rotterdam or Eindhoven, but usually yo ...
written 7.8 years ago by Pieter Neerincx360
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Comment: C: Galaxy--Upload Data File
... Hi Jen, If you do that, please make it an option in universe_wsgi.ini. It's fine if uploads of > 2GB will be disabled by default, but please allow me to enable it if it's working for me... Cheers, Pi mobile: +31 6 143 66 783 e-mail: pieter.neerincx@gmail.com skype: pieter.online ...
written 7.8 years ago by Pieter Neerincx360
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Comment: C: How To Run A Pipeline On Many Data Sets ?
... Hi, I'm also very interested in how to loop over multiple datasets. Although the info below is important to make a Galaxy scale to serve many users simultaneously, I don't see how this will help to provide looping support. You'll still need to manually configure the same tool 1000 times and start 1 ...
written 8.0 years ago by Pieter Neerincx360
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Comment: C: Search In Libraries
... Hi Nate, Thanks for the fast reply and fix! I'll give the update a try... Cheers, Pi mobile: +31 6 143 66 783 e-mail: pieter.neerincx@gmail.com skype: pieter.online ...
written 8.3 years ago by Pieter Neerincx360
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Comment: C: Search In Libraries
... Hi Jeremy, Yes, but probably not until next week. I'll get back to you when I've tried it on the latest version... Cheers, Pi mobile: +31 6 143 66 783 e-mail: pieter.neerincx@gmail.com skype: pieter.online ...
written 8.3 years ago by Pieter Neerincx360
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Comment: C: Search In Libraries
... Hi all, I used to have working sniffers for custom data formats, but the documentation on the wiki is no longer enough to make it work :(... When I start our Galaxy I do see log messages like this: galaxy.datatypes.registry INFO 2010-08-17 18:20:28,666 Loaded sniffer for datatype: galaxy. ...
written 8.3 years ago by Pieter Neerincx360
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Comment: C: Search In Libraries
... Dear Jeremy, Thanks, good to know. Then I can stop searching for the magic setting on the config files :) Our own instance. I just tried the public/main Galaxy instance and tool search works just fine for me over there, so I doubt it's my web browser. I tried Camino, FireFox and Safari all on ...
written 8.3 years ago by Pieter Neerincx360
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Comment: C: Search In Libraries
... Hi, When I click the Options button in the tool pane on the left there's no option to search for tools. I can only show or hide recently used tools. Is there something I need to configure/enable to make this work? I browsed the Wiki, but could not find relevant documentation... Cheers, Pi ...
written 8.3 years ago by Pieter Neerincx360

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