User: tamrin.chowdhury

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Posts by tamrin.chowdhury

<prev • 3 results • page 1 of 1 • next >
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Stringtie tool failed with error "NameError: name 't_id' is not defined"
... Hello I have used the Stringtie tool successfully to produce transcript assemblies and additional ballgown input files. I wanted to also try the DeSeq2 tool so I tried to run Stringtie again with the same data and reference with default settings and changed the additional output to Deseq/EdgeR. B ...
galaxy stringtie stringtie-merge rna-seq written 16 months ago by tamrin.chowdhury40 • updated 16 months ago by Jennifer Hillman Jackson25k
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Comment: C: Phenotype data for Ballgown tool
... Thank you for the kind advice and suggestion. ...
written 17 months ago by tamrin.chowdhury40
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6 follow
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Phenotype data for Ballgown tool
... Hello I am doing RNA-seq analysis using local server galaxy. I'm following the new Tuxedo protocol HISAT>Stringtie>Ballgown. I have a question regarding Ballgown input. Apart from the 5 stringtie output files ballgown requires another phenotype data file for input. Is there any reference phen ...
ballgown galaxy rna-seq written 17 months ago by tamrin.chowdhury40 • updated 9 months ago by rpink10

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