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Posts by tamrin.chowdhury
... Hello I have used the Stringtie tool successfully to produce transcript assemblies and additional ballgown input files. I wanted to also try the DeSeq2 tool so I tried to run Stringtie again with the same data and reference with default settings and changed the additional output to Deseq/EdgeR. B ...
Comment: C: Phenotype data for Ballgown tool
... Thank you for the kind advice and suggestion. ...
... Hello I am doing RNA-seq analysis using local server galaxy. I'm following the new Tuxedo protocol HISAT>Stringtie>Ballgown. I have a question regarding Ballgown input. Apart from the 5 stringtie output files ballgown requires another phenotype data file for input. Is there any reference phen ...
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