User: hershbc

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hershbc40
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9 months ago
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1 year, 2 months ago
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Posts by hershbc

<prev • 5 results • page 1 of 1 • next >
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Renaming Galaxy Output, Edit Attributes, Datatype, and required metadata content/attributes
... Hello Everyone, my colleague is having trouble renaming files in galaxy. He clicks the pencil button then adds a phrase at the end of the galaxy-generated name ex. Join on data 64 and data 79 changed to: Join on data 64 and data 79 mut1 Then he clicks the save attributes button and gets and e ...
datatype name metadata bed interval written 9 months ago by hershbc40 • updated 9 months ago by Jennifer Hillman Jackson25k
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Answer: A: Has anyone successfully run CummeRbund in Galaxy?- Gene ID Null
... For the few people following this, it turns out that it is a bug in the program. Galaxy devteam is working to fix it. You can follow the progress here: https://github.com/galaxyproject/tools-devteam/issues/340 ...
written 14 months ago by hershbc40
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Comment: C: Cummerbund visualization of expression plot
... Looks like they are trying to solve it! https://github.com/galaxyproject/tools-devteam/issues/340 ...
written 14 months ago by hershbc40
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Comment: C: Cummerbund visualization of expression plot
... Did you ever get it to work? I'm having the same problems in cummeRbund. Gene_ID null. I'm debating going through that whole tutorial just to see if I could get it to work once, but I don't want to waste my time if it isn't going to work. ...
written 14 months ago by hershbc40
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Has anyone successfully run CummeRbund in Galaxy?- Gene ID Null
... I am struggling with the final steps of my RNA-Seq pipeline. The data has been cleaned up, mapped using HISAT2, transcriptomes created using both stringtie and cufflinks (to see if one or the other would solve the cummeRbund problem) then merged and cuffdiff was run. My cuffdiff tables show some sig ...
galaxy cummerbund rna-seq written 14 months ago by hershbc40

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