User: shafnaasmy.v.s

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4 months, 2 weeks ago
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Posts by shafnaasmy.v.s

<prev • 4 results • page 1 of 1 • next >
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deseq2 output interpretation problrm
... hi i did my DeSeq2 from the results from htseq-count my input was 3 control and 6 test htseq-count result uc001aak.4 0 uc001aak.4 0 uc001aak.4 0 uc001aak.4 0 uc001aak.4 0 uc001aak.4 0 uc001aak.4 0 uc001aak.4 0 uc001aak.4 0 uc001aak.4 2 uc001aak.4 0 the result from deseq2 is like this uc060kef. ...
deseq2 rna-seq written 4 months ago by shafnaasmy.v.s10 • updated 4 months ago by Devon Ryan1.7k
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cufflinks error in the bam files
... hi my workflow was hisat-->stringtie-->cuffdiff i added the bam files from hisat to cuff diff along with the cuffmerge result Fatal error: Exit code 1 () Error: sort order of reads in BAMs must be the same wat is the problem plz help ...
cufflinks written 5 months ago by shafnaasmy.v.s10 • updated 5 months ago by Jennifer Hillman Jackson23k
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stringtie error in refernce genome file
... hi i m working on human datasets i tired running stringtie with the bam file from hisat....i get error saying Fatal error: Exit code 1 () Error: invalid genomic sequence data (NW_003315959.1)! i tried it using the gff,gff3 and gtf files of the refernce genome of homosaipens plz help thanks in a ...
stringtie rna-seq written 5 months ago by shafnaasmy.v.s10 • updated 5 months ago by Jennifer Hillman Jackson23k
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galaxy problm cufflinks
... hi i m working on rna seq analysis.all my sam and bam files are more than 4 gb i upoaded it using ftp and all are seen loaded in galaxy.. but when i run cufflinks its not displayed it shows "no sam or bam datasets..." but i can see the gff file... pls help shafna ...
cufflinks ngs rna-seq written 6 months ago by shafnaasmy.v.s10

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