User: alex

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alex40
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2 weeks, 2 days ago
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2 months, 1 week ago
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Posts by alex

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Comment: C: How to share a data library with other users
... Okay. I will re-create the library. Do you think this feature should be added to Galaxy? ...
written 5 weeks ago by alex40
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Comment: C: How to share a data library with other users
... Yes. That's right. Is there no corrective action? No way to turn this on after the fact? ...
written 5 weeks ago by alex40
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Comment: C: How to share a data library with other users
... I'm not sure what you mean exactly. I created the library recently by importing data from the machine the galaxy instance runs on through the admin interface. Now, I see four permissions possible on the library: - Roles that can access the library: Everyone - Roles that can manage permissions on th ...
written 5 weeks ago by alex40
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Comment: C: How to share a data library with other users
... Is there a way to change permissions on a batch of datasets? I believe there are a couple hundred in the data library and I'd rather not change permissions one by one.. ...
written 5 weeks ago by alex40
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How to share a data library with other users
... I'm having some trouble allowing other users of my galaxy to see the files in the data library I imported. They can see the directories but not the files. - **Tried**: Admin > Data Libraries > (my library) > Library Actions > edit permissions > **Result**: The "Access library role ...
data-library written 5 weeks ago by alex40
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Comment: C: How to label a dataset as a particular datatype in a shared library
... No worries Martin, I understand things sometimes fall by the wayside! Adding them one by one in the admin UI isn't too terrible. ...
written 8 weeks ago by alex40
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Comment: C: IGV integration with Galaxy
... @Dan I'm having another, related issue: https://biostar.usegalaxy.org/p/22778/ ...
written 8 weeks ago by alex40
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How to label a dataset as a particular datatype in a shared library
... I'm a galaxy admin, and I'm running my galaxy on a server with a bunch of genomes in a folder called `/globus`. Under the admin panel, I've added the entire directory structure under `/globus/a_group_of_patients` as a shared data library. However, I can't set the type of the bam files as "bam" in ...
shared data data library written 8 weeks ago by alex40 • updated 8 weeks ago by Martin Čech ♦♦ 3.9k
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IGV integration with Galaxy
... I have a couple questions about the IGV integration with Galaxy: 1. [This site at Princeton][1] seems to imply there's a setup process for IGV visualization of BAM files from Galaxy, but @bgruening mentioned the IGV integration ships with galaxy by default. I don't see the icon in my galaxy curren ...
galaxy igv written 9 weeks ago by alex40 • updated 9 weeks ago by Daniel Blankenberg ♦♦ 1.6k

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