User: gg832

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gg83210
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2 months, 1 week ago
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Posts by gg832

<prev • 12 results • page 1 of 2 • next >
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Answer: A: Trinity- error setting metadata
... Hi Jen, Thanks for the quick response! Yes, I have just now autodetected the metadata and the output looks good. I made the mistake of trying to review it beforehand and, of course, it appeared that it had not completed.. lol So far, everything looks great. Being able to run Trinity on here is a hu ...
written 20 days ago by gg83210
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Trinity- error setting metadata
... Hello, I was finally able to get Trinity to run, but I've encountered an error. => "An error occurred setting the metadata for this dataset. Set it manually or retry auto-detection." Could someone provide me with some help on this error? It is significant? This is my first Trinity run, so I'm no ...
trinity error written 20 days ago by gg83210
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Trinity not running- still
... Hi, I've been trying to run Trinity with my data for more than a month now. Currently, it's been six days since I last deleted and resubmitted it. It's still says "this job is waiting to run." Could someone please look into why my jobs won't run? I'm using the default parameters, and I always resu ...
trinity written 5 weeks ago by gg83210 • updated 4 weeks ago by Jennifer Hillman Jackson22k
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Comment: C: Trinity job not running
... Hi Jen, I'm still having trouble getting my Trinity job to run. Could you take a look at it please? Thanks, Gia ...
written 6 weeks ago by gg83210
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Trinity job not running
... Hello, I submitted a job to trinity on Monday (3 days ago) and it still says the job is waiting to run. Is there something additional that I need to do when I submit a job so it will run successfully? Thanks, Gia ...
trinity written 7 weeks ago by gg83210 • updated 7 weeks ago by Jennifer Hillman Jackson22k
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Trinity job not running
... Hi, I've been having a lot of trouble with Trinity. I'm trying to do de novo assembly with paired-end sequences (~125 GB total). Do I need to contact the admins each time I try to run this job? I say "each time" because of the trouble with the servers. My data ran once, but it terminated abnormally, ...
galaxy trinity written 8 weeks ago by gg83210 • updated 7 weeks ago by Jennifer Hillman Jackson22k
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Comment: C: Trinity run failed at start- please help
... Hi Nate, I submitted the job again ~11 hours ago. It's still waiting to run. I'm assuming it might be busy because it's just recently back up and running? Thanks, Gia ...
written 9 weeks ago by gg83210
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Trinity run failed at start- please help
... Hello, My Trinity run just failed with the error below. I'm trying to do a de novo assembly of paired-end RNAseq data. Any help with understanding this error and how I might correct it would be greatly appreciated! Thanks, Gia Galaxy note: workdir is /pylon5/mc48nsp/xcgalaxy/main_staging ...
de novo assembly trinity rna-seq written 9 weeks ago by gg83210 • updated 7 weeks ago by Jennifer Hillman Jackson22k
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Answer: A: Queue times to run Trinity?
... After 10 days, my run finally resulted in a "Remote job server could not determine this job's state." error. I searched this issue again, and found this answer: https://biostar.usegalaxy.org/p/22642/#22674, so I resubmitted the run. Fingers crossed! ...
written 9 weeks ago by gg83210
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Comment: C: Queue times to run Trinity?
... Trinity still not running. Any update? Thanks. ...
written 9 weeks ago by gg83210

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