User: gg832

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gg83220
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Posts by gg832

<prev • 7 results • page 1 of 1 • next >
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Trinity job not running
... Hi, I've been having a lot of trouble with Trinity. I'm trying to do de novo assembly with paired-end sequences (~125 GB total). Do I need to contact the admins each time I try to run this job? I say "each time" because of the trouble with the servers. My data ran once, but it terminated abnormally, ...
galaxy trinity written 3 days ago by gg83220
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Comment: C: Trinity run failed at start- please help
... Hi Nate, I submitted the job again ~11 hours ago. It's still waiting to run. I'm assuming it might be busy because it's just recently back up and running? Thanks, Gia ...
written 8 days ago by gg83220
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Trinity run failed at start- please help
... Hello, My Trinity run just failed with the error below. I'm trying to do a de novo assembly of paired-end RNAseq data. Any help with understanding this error and how I might correct it would be greatly appreciated! Thanks, Gia Galaxy note: workdir is /pylon5/mc48nsp/xcgalaxy/main_staging ...
de novo assembly trinity rna-seq written 9 days ago by gg83220 • updated 8 days ago by Nate Coraor3.0k
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Answer: A: Queue times to run Trinity?
... After 10 days, my run finally resulted in a "Remote job server could not determine this job's state." error. I searched this issue again, and found this answer: https://biostar.usegalaxy.org/p/22642/#22674, so I resubmitted the run. Fingers crossed! ...
written 9 days ago by gg83220
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Comment: C: Queue times to run Trinity?
... Trinity still not running. Any update? Thanks. ...
written 11 days ago by gg83220
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Comment: C: Queue times to run Trinity?
... Thank you, Jen! Since the job still indicates that it is 'waiting to run,' do you know how long it normally takes to begin a run? I know that it can vary depending on usage, but I'd just like to have a rough estimate so I know when to reach out to you guys if it's taking too long. If this assembly ...
written 14 days ago by gg83220
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Queue times to run Trinity?
... Hello, I'm rather new to Galaxy. I'm trying to run de novo assembly for RNAseq data using Trinity on Galaxy (at usegalaxy.org). I have paried-end 150 bp reads. Total size for both data sets is approximately 126 GB. The job has been queued now for more than three days. Is this normal? I used all of ...
rna-seq galaxy trinity written 15 days ago by gg83220

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