User: georgess.dan

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georgess.dan40
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Posts by georgess.dan

<prev • 17 results • page 1 of 2 • next >
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Answer: A: IDR with Mm10
... Update: I was informed that galaxy.au will not be installing new tools at the moment. There is [a new version of IDR from late 2017 that is wrapped for Galaxy by the IUC team][1] but has not been installed to any Galaxy instance yet. Would the admins of the main Galaxy instance consider installing g ...
written 4 weeks ago by georgess.dan40
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Answer: A: IDR with Mm10
... Hi Jen, Thank you for your reply. I went through all the public Galaxy servers and found that https://usegalaxy.org.au is the only Galaxy instance that provides IDR (although a depricated version as I mentioned in my initial post). I have contacted the Modencode and galaxy.org.au administrators to ...
written 4 weeks ago by georgess.dan40
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IDR with Mm10
... Hi, I am interested in comparing peaks from replicates using IDR. I have found that this [Galaxy instance has IDR][1] but only provides a genome table for mm9. Is there a Galaxy instance that provides mm10 for IDR? Thanks! Dan [1]: http://159.149.160.87/galaxy ...
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Comment: A: Trimmomatic Error Message
... Hi Jen, As usual, thank you for your prompt reply. I read the information in the links you attached and curated all files names and attributes but the outcome was still the same (see error below). I think either there is something else that I'm doing wrong (and usually algorithms do not run if you ...
written 17 months ago by georgess.dan40
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Trimmomatic Error Message
... Hello, Part of my Galaxy Workflow is to have Trimmomatic trim a FASTQsanger and to convert the output into a FASTQ.gz. Somewhere in the process, Trimmomatic gives the error pasted below. Does anyone know what this means? Is it not able to compress the output into fastq.gz? Thanks, Dan --------- ...
fastq.gz trimmomatic fastqsanger fastq written 17 months ago by georgess.dan40
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Answer: A: Quota limit reached... but not really
... The problem is now solved: I had to go to https://usegalaxy.org/history/list, click 'Advanced Search', then 'status: all', and then ensure every history says 'deleted permanently'. ...
written 18 months ago by georgess.dan40
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Answer: A: How to Intersect Replicates in ChIPseq workflow
... Hi Mo, Thanks for tutorial. It looks super helpful. I'm not sure how to create a multi-file node. The Multiple Intersect function in BEDTools only has 2 input slots (1 for "Genome file" and 1 for BED file) and allows for one input file per slot. Thanks, Dan ...
written 18 months ago by georgess.dan40
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Answer: A: Deletion of data to free space is not working
... If there is nothing that can be done about this bug, would you mind deleting my account so I can create a new one and start from a clean slate? Thanks, Dan ...
written 18 months ago by georgess.dan40
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Comment: C: Deletion of data to free space is not working
... I have purged everything and anything. I am now down to "empty" on actual data, but Galaxy still showing "100% usage" and "warning you have used all your quota..." ...
written 18 months ago by georgess.dan40
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Comment: C: Deletion of data to free space is not working
... Logging out and back in did not solve this problem for me. Any heko would be appreciated! Thanks! Dan ...
written 18 months ago by georgess.dan40

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Scholar 18 months ago, created an answer that has been accepted. For A: FTP upload low speed

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