User: mescobar

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mescobar0
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Posts by mescobar

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Arabidopsis genome to HiSat2
... Would it be possible to get the Arabidopsis thaliana genome pre-loaded into HISAT2 on Galaxy Main? Thanks! ...
rna-seq index genome native custom written 11 weeks ago by mescobar0 • updated 10 weeks ago by Jennifer Hillman Jackson25k
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Comment: C: Displaying bam or bigwig files in UCSD genome browser
... Hi Mo, Thanks for the help. Unfortunately, IGV won't load when I click on the link- I get a "localhost refused to connect" error message. This occurs regardless of whether the IGV link comes from a BED file or a BAM file. The UCSC browser isn't a good option, because they only have an old version o ...
written 14 months ago by mescobar0
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Displaying bam or bigwig files in UCSD genome browser
... Hello, I am attempting to view my RNAseq mapping file output (SAM) on the UCSC genome browser. This is Arabidopsis RNAseq data mapped to TAIR10. When I convert the SAM file to a BAM file, I get links to diplay the data in IGV, IBV, or bam.iobio. When I convert the SAM file to a BigWig file, I get l ...
bam rna-seq written 15 months ago by mescobar0 • updated 15 months ago by Mo Heydarian790

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