User: Mic

gravatar for Mic
Mic70
Reputation:
70
Status:
Trusted
Location:
Australia
Last seen:
1 year, 8 months ago
Joined:
5 years, 2 months ago
Email:
m*******@gmail.com

Posts by Mic

<prev • 58 results • page 1 of 6 • next >
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Comment: C: add column tool changed < to __lt__
... Thank you for the link and I will try to change it. Why is this not as default behavior? ...
written 2.0 years ago by Mic70
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adding a header to a tabular file
... Hi, I have tabular file in my history and I would like to add a header to it. What would be the best way to do it Galaxy? Thank you in advance. Mic ...
galaxy written 2.0 years ago by Mic70 • updated 2.0 years ago by Bjoern Gruening5.1k
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Comment: C: Filter Bowtie 2 alignement
... Thank you. Did you mean with "text reformatting (with awk)" this tools from the toolshed 'text_processing'? ...
written 2.0 years ago by Mic70
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Comment: C: add column tool changed < to __lt__
... Hi Hans-Rudolf, I tried it on *usegalaxy.org* too, but I received the same problem. This is my history https://usegalaxy.org/u/mictadlo/h/link-problem . How could I avoid that add tool changes ...
written 2.0 years ago by Mic70
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add column tool changed < to __lt__
... Hi, I would like to add a column which contains an URL ` ...
galaxy written 2.0 years ago by Mic70 • updated 2.0 years ago by Hotz, Hans-Rudolf1.8k
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Comment: C: Filter Bowtie 2 alignement
... What would you use for SNP discovery and Chip-Seq or do you have a list of MAPQ values are best for a particular applications? ...
written 2.0 years ago by Mic70
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Comment: C: Filter Bowtie 2 alignement
... Would you recommend to use MAPQ = 1? ...
written 2.0 years ago by Mic70
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Filter Bowtie 2 alignement
... Hi, I read this post (http://biofinysics.blogspot.com.au/2014/05/how-does-bowtie2-assign-mapq-scores.html) which describes on how to filter Bowtie 2 alignment with the following command: awk '$5 == 3 || $5 == 8 || $5 == 23 || $5 == 24 || $5 == 40 || $5 == 42' file.sam The idea behind the com ...
samtools bowtie alignment written 2.0 years ago by Mic70 • updated 2.0 years ago by Devon Ryan1.9k
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MACS and BDGdiff
... Hi, I run MACS2 with broad and paired-end settings, but it did not produced any lambda files which are need for BDGdiff. How can I create manually lambda files from MACS2 output? Thank you in advance. Best wishes, Mic ...
chip-seq written 2.1 years ago by Mic70
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extracting ID from column
... Hi, I have a column which contains the following lines ID=AT1G01010;Note=protein_coding_gene;Name=AT1G01010 ID=AT1G01020;Note=protein_coding_gene;Name=AT1G01020 .... How is possible to keep in the column the ID values: AT1G01010 AT1G01020 Thank you in advance. Best wi ...
galaxy written 2.2 years ago by Mic70 • updated 2.2 years ago by Jennifer Hillman Jackson25k

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Popular Question 22 months ago, created a question with more than 1,000 views. For ansible-playbook has caused SSH error with usegalaxy-playbook
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