User: bcuser30

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bcuser3010
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4 months, 2 weeks ago
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1 year, 6 months ago
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h**********@wsu.edu

Posts by bcuser30

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Comment: C: View all histories returns blank page
... I don't see any evidence of local changes in the source tree. Only recent change was creating a copy to test cluster configuration with. Basically a cp galaxy test-galaxy and updated the galaxy.ini accordingly. The copy uses a separate database. Perhaps there are some references with in test-gal ...
written 4 months ago by bcuser3010
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View all histories returns blank page
... Running Galaxy 17.09, upon recent restart users remarked that 'view all histories' returns a blank page. There are javascript errors when troubleshooting via browser, but I'm unsure how to interpret. Nothing obvious is displayed in galaxy logs. Is it a particular file that's not found or is it th ...
masthead local galaxy 17.09 admin written 4 months ago by bcuser3010 • updated 4 months ago by Jennifer Hillman Jackson25k
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Comment: A: fastqc not found
... I should have clarified this is on a local installation of 17.01. Conda is in use and I am an admin. I have been able to confirm this is related to our cluster. I suspect something is wrong with the job_conf.xml. ...
written 15 months ago by bcuser3010
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fastqc not found
... I'm having a problem with fastqc. I don't understand why it claims not to be found. What am I missing? ``` Fatal error: Exit code 1 () /bin/sh: 1: fastqc: not found Traceback (most recent call last): File "/main/sites/galaxy/galaxy/shed_tools/toolshed.g2.bx.psu.edu/repos/devteam/fastqc/9337dd1f ...
galaxy local fastqc written 15 months ago by bcuser3010 • updated 15 months ago by Jennifer Hillman Jackson25k
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Answer: A: Fail to upload data to local Galaxy 16.07
... I'm encountering a similar issue, but creating the link does not resolve my problem. What else should I be looking for? Also, running v17.01 rather than 16.07 as the OP **update** I recreated the .vdev and restarted and it's working. ...
written 18 months ago by bcuser3010

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