User: deepti1rao

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deepti1rao10
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1 month ago
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1 year, 5 months ago
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Posts by deepti1rao

<prev • 7 results • page 1 of 1 • next >
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Need help with Circos plotting of snps on Galaxy
... Please help me to make a Circos plot of snps against the reference genome on Galaxy. I have a bed file of snps and the reference fasta file. ...
circos snps written 4 weeks ago by deepti1rao10
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Freebayes on Galaxy shows vcf output with GT INFO field as 0/0
... Freebayes on Galaxy shows vcf output with GT INFO field as 0/0. Chr1 10000171 . G A 6.18434e-10 . AB=0;ABP=0;AC=0;AF=0;AN=2;AO=19;CIGAR=1X;DP=75;DPB=75;DPRA=0;EPP=5.8675;EPPR=3.16541;GTI=0;LEN=1;MEANALT=1;MQM=5.36842;MQMR=4.46429;NS=1;NUMALT=1;ODDS=22.6724;PAIRED=1;PAIREDR=1;PAO=0;PQA=0;PQR=0;P ...
freebayes gt vcf galaxy written 9 weeks ago by deepti1rao10 • updated 8 weeks ago by Jennifer Hillman Jackson25k
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versions of tools
... How do I get to know the versions of tools available on usegalaxy.org? For eg.How does one check the version of samtools. ...
tools version written 13 months ago by deepti1rao10 • updated 13 months ago by Jennifer Hillman Jackson25k
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FTP upload on galaxy
... I'm trying to uplaod files to my galaxy history using Filezilla. However, I am not able to establish a connection with the Galaxy server. What port should I use? ...
galaxy ftp written 13 months ago by deepti1rao10
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Answer: A: ANNOVAR galaxy returning an empty file
... This is still not working for me, though I changed the output to tabular. ...
written 15 months ago by deepti1rao10
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Answer: A: BAM files fail to be recognized
... My problem has not resolved yet. I was trying to convert BAM files (10,11,12) into SAM files. It didn't work. I even converted them into BAI using convert format by clicking on the pencil icon. However, I couldn't execute SAMtools even after that. What am I doing wrong? Here's the link to my hi ...
written 15 months ago by deepti1rao10
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BAM files fail to be recognized
... I generated BAM files on galaxy using BWA-MEM. I am trying to run BAMtools, Picard, etc on them. But none of them work. I got this error when I tried inputting one file at a time: open: No such file or directory [bam_index_build2] fail to open the BAM file. Fatal error: Exit code 1 () Picked up _ ...
bam galaxy written 16 months ago by deepti1rao10 • updated 15 months ago by y.hoogstrate460

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