User: kjh318

gravatar for kjh318
kjh31810
Reputation:
10
Status:
New User
Location:
Last seen:
2 months, 1 week ago
Joined:
1 year, 5 months ago
Email:
k*****@psu.edu

Posts by kjh318

<prev • 4 results • page 1 of 1 • next >
0
votes
1
answer
134
views
1
answers
Comment: C: DEseq2 replicate not normalizing
... Hi Jen, That is exactly what I'm seeing: 5 of the 6 replicates have values with multiple decimal points but one is just the whole numbers same as the htseq-count file. The normalized counts files in the Py Comparative data set should show this clearly, the SG-2 replicate is not normalizing. I tried ...
written 11 weeks ago by kjh31810
1
vote
1
answer
134
views
1
answer
DEseq2 replicate not normalizing
... Hi there, This issue has been posted about before but I couldn't find a definitive answer. I noticed that the DEseq2 normalization count table has one replicate that is not normalized. The number of reads in this table is exactly the same number as the htseq-count file for that replicate. I first r ...
htseq deseq2 rna-seq normalization written 11 weeks ago by kjh31810 • updated 11 weeks ago by Jennifer Hillman Jackson25k
0
votes
1
answer
414
views
1
answers
Comment: C: DESEQ2 is not normalizing HTSEQ counts for some samples
... Hi there, I am dealing with the same issue with my data, one of my replicates is not normalizing in DEseq2 even though all replicates were analyzed with the same settings. I was curious if you were about to resolve this issue or could provide more information. What I've tried so far: -Remapping the ...
written 11 weeks ago by kjh31810
0
votes
1
answer
1.6k
views
1
answer
Cuffdiff Test Statistic Explanation
... Hi there, I am curious as to what statistical test cuffdiff uses to determine the test statistic and its significance. I have tried finding it in the literature but its explanation is usually vague. Any guidance would be greatly appreciated! -Mike ...
cuffdiff rna-seq written 18 months ago by kjh31810 • updated 18 months ago by Jennifer Hillman Jackson25k

Latest awards to kjh318

Popular Question 6 months ago, created a question with more than 1,000 views. For Cuffdiff Test Statistic Explanation

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 105 users visited in the last hour