User: Wanderer

gravatar for Wanderer
Wanderer10
Reputation:
10
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New User
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Last seen:
13 hours ago
Joined:
9 months, 3 weeks ago
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a******************@gmail.com

Posts by Wanderer

<prev • 13 results • page 1 of 2 • next >
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Galaxy Cuffdiff output doesnt correspont the output from manual
... Hi people! I was trying to run the local version of cummeRbund but the files that I get from the cuffdiff output from galaxy werent the same extension, the manual from cummeRbund says that cuffdiff outputs are those files: isoforms.fpkm_tracking genes.fpkm_tracking cds.fpkm_tracking tss_groups.fpkm ...
cuffdiff galaxy rna-seq written 13 hours ago by Wanderer10 • updated 9 hours ago by Jennifer Hillman Jackson23k
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Answer: A: how to down load the analysis data from the Galaxy
... You can download all files from your history using the (history options, next to all histories icon) and select the last option ...
written 6 days ago by Wanderer10
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Answer: A: Volcano plot from Tool Shed?
... Try cummerRbund on RNA-SEQ Analysis ...
written 6 days ago by Wanderer10
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Comment: C: Cummerbund isnt working, none of the plots are working
... No problem, the tool worked for print some plots, now I am trying to understand the plots :) Thank you again angel! ...
written 6 days ago by Wanderer10
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Cummerbund isnt working, none of the plots are working
... Hi people, I did the analysis of differential expression with cuffdiff but when I try to plot the results with cummerbund none of plot types are working, what can I do? > Dataset Error An error occured while running the tool toolshed.g2.bx.psu.edu/repos/devteam/cummerbund/cummeRbund/1.0.1. To ...
cuffdiff cummerbund rna-seq written 8 days ago by Wanderer10 • updated 7 days ago by Jennifer Hillman Jackson23k
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Comment: C: CummerRbund sqlite input file doesnt correspond to Cuffdiff output
... Thank you so much! love you!! ...
written 13 days ago by Wanderer10
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CummerRbund sqlite input file doesnt correspond to Cuffdiff output
... Is Cummerbund working right now? I tried to use but it is asking me the sqlite file, but cuffdiff doesnt output none sqlite file. How can I make it work? Thank you! ...
cuffdiff galaxy written 13 days ago by Wanderer10
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Comment: C: CummerBund in galaxy
... Hi Jen, would you mind to tell me if the Cummerbund is working right now? I tried to use but it is asking me the sqlite file, but cuffdiff doesnt output none sqlite file. How can I make it work? Thank you! @jennifer ...
written 13 days ago by Wanderer10
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Comment: C: TopHat error (An error occurred setting the metadata for this dataset Set it man
... Thank you very much, you are an angel! ...
written 25 days ago by Wanderer10
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TopHat error (An error occurred setting the metadata for this dataset Set it manually or retry auto-detection)
... Hello, I was trying to running the TopHat on galaxy but this error show up everytime I try: > An error occurred setting the metadata for this dataset Set it > manually or retry auto-detection I dont know how to solve it, anyone already face this problem? Thank you! ...
software error tophat rna-seq written 25 days ago by Wanderer10 • updated 25 days ago by Jennifer Hillman Jackson23k

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