User: msprindzhuk

gravatar for msprindzhuk
msprindzhuk50
Reputation:
50
Status:
New User
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Last seen:
8 months ago
Joined:
1 year, 9 months ago
Email:
m**********@mail.ru

Posts by msprindzhuk

<prev • 57 results • page 1 of 6 • next >
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What Galaxy free instance available in the web has tools to process Streptococcus pneumonia genomes?
... What Galaxy free instance available in the web has tools to process Streptococcus pneumonia genomes? ...
custom galaxy genome reference public written 8 months ago by msprindzhuk50 • updated 8 months ago by Jennifer Hillman Jackson25k
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What free Galaxy instance has a working SNPEff and other annotation and VCF processing tools to process a human genome data?
... What free Galaxy instance has a working SNPEff and other annotation and VCF processing tools to process a human genome data? Need to do annotation of a a thyroid cancer patient. Tried using VEP and wAnnovar, looking for more software. Thx. ...
snpeff vcf human annotation variant written 8 months ago by msprindzhuk50 • updated 7 months ago by Jennifer Hillman Jackson25k
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Is there any way to install RAST, BG7 and Trinity annotation engines on Galaxy instance?
... Is there any way to install RAST, BG7 and Trinity annotation engines on Galaxy instance? ...
rast bg7 trinity written 12 months ago by msprindzhuk50 • updated 12 months ago by Jennifer Hillman Jackson25k
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How to set up Prokka on Galaxy instance correctly?
... On running Prokka we have: The Galaxy framework encountered the following error while attempting to run the tool: Traceback (most recent call last): File "/media/home/galaxy/galaxy/lib/galaxy/jobs/runners/__init__.py", line 170, in prepare_job job_wrapper.prepare() File "/media/home/galaxy ...
prokka written 12 months ago by msprindzhuk50 • updated 12 months ago by Jennifer Hillman Jackson25k
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Comment: C: How to annotate 500 vcf files using SNPEff or smth else and put every separate r
... explain, OK.................. ...
written 18 months ago by msprindzhuk50
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How to annotate 500 vcf files using SNPEff or smth else and put every separate result in a folder with the name of the SRA identifier?
... How to annotate 500 vcf files using SNPEff or smth else and put every separate result in a folder with the name of the SRA identifier? Is it implementable using Galaxy tools? ...
batch annotation snpeff written 18 months ago by msprindzhuk50 • updated 18 months ago by Guy Reeves1.0k
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How to align 500 fastq unpaired files to an uploaded reference and put every single result to a new folder?
... How to align separately 500 fastq unpaired files to an uploaded reference and put every single result to a new folder? Is it affordable to implement using galaxy tools? ...
alignment mapping batch fastq written 18 months ago by msprindzhuk50 • updated 18 months ago by Guy Reeves1.0k
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How to form a correct custom reference for making it acceptable by Galaxy variant callers?
... I have prepared custom reference made of 3 M. Tb. genes: >M. tuberculosis H37Rv|Rv0005|gyrB VAAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAG YATTVNVVLLEDGGVEVADDGRGIPVATHASGIPTVDVVMTQLHAGGKFDSDAYAISGGL HGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLGLKQGAPTKKTGSTVRFWADPAVF ETTEYDFETVARRLQEMAFL ...
reference genome variant written 18 months ago by msprindzhuk50 • updated 18 months ago by Jennifer Hillman Jackson25k
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How to run preformed Galaxy pipeline programmatically and dynamically change pipeline`s parameters like new SRA identifier?
... How to run preformed Galaxy pipeline programmatically and dynamically change pipeline`s parameters like SRA identifier? Need to run a pipeline on an input of 500 new SRA identifiers. Is it possible using Bioblend, Python and Galaxy`s API? ...
batch pipeline api bioblend sra written 18 months ago by msprindzhuk50 • updated 18 months ago by Jennifer Hillman Jackson25k
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How to manage Galaxy memory resources programmatically using Bioblend and API?
... How to manage Galaxy memory resources programmatically using Bioblend and API? Are there any tutorials, cookbook, recipes for using Bioblend with Galaxy instance? ...
bioblend written 18 months ago by msprindzhuk50 • updated 18 months ago by Jennifer Hillman Jackson25k

Latest awards to msprindzhuk

Rising Star 18 months ago, created 50 posts within first three months of joining.

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