User: msprindzhuk

gravatar for msprindzhuk
msprindzhuk10
Reputation:
10
Status:
New User
Location:
Last seen:
19 hours ago
Joined:
1 week, 3 days ago
Email:
m**********@mail.ru

Posts by msprindzhuk

<prev • 12 results • page 1 of 2 • next >
0
votes
1
answer
22
views
1
answer
How to install Pilon manually? It does not go via a toolshed.
... How to install Pilon manually? It does not go via a toolshed.......................................... ...
pilon written 1 day ago by msprindzhuk10 • updated 1 day ago by Martin Čech ♦♦ 3.7k
0
votes
0
answers
20
views
0
answers
Is there any tutorial on fixing errors when tool`s wrapper do not provide smooth installation?
... Pilon and VTTools are not installed to our local Galaxy cloud instance. We have tried to reinstall but they hang in Cloning stage and installation never occurs completely. What to do to fix? ...
installation tool written 1 day ago by msprindzhuk10
0
votes
0
answers
20
views
0
answers
How to fix an error on tool loading?
... How to fix an error on tool loading? Here it is: 2017-02-23 15:12:51.493790 Tool Loading ./tools/extract/liftOver_wrapper.xml [Errno 2] No such file or directory: './database/tmp/tmp-toolshed-gmfcraqQgY7/liftOver.loc' 2017-02-22 08:53:19.003426 Tool Loading ./tools/extract/liftOver_wrapper.xm ...
tools installation toolshed written 2 days ago by msprindzhuk10
0
votes
1
answer
49
views
1
answers
Comment: C: We can`t install Pilon and VTTools to our Galaxy cloud instance, how to fix that
... Thank you, should we change something in XML or .ini files? Will standard Galaxy instance work on cloud or should we switch to the CloudMan or the Globe variation? ...
written 2 days ago by msprindzhuk10
0
votes
1
answer
18
views
1
answer
Are there Snap and BBMap aligners in Galaxy?
... Are there Snap and BBMap aligners in Galaxy? Could you please include them if not. ...
snap bbmap written 4 days ago by msprindzhuk10 • updated 4 days ago by Jennifer Hillman Jackson21k
0
votes
1
answer
49
views
1
answer
We can`t install Pilon and VTTools to our Galaxy cloud instance, how to fix that?
... We can`t install Pilon and VTTools to our Galaxy cloud instance, how to fix that? Should we change smth in galaxy.ini and .xml files? Some tools hang in yellow Cloning stage and do not appear in menu. Need advices how to tune it properly. Thx. ...
pilon vttools written 4 days ago by msprindzhuk10 • updated 4 days ago by Jennifer Hillman Jackson21k
0
votes
0
answers
34
views
0
answers
Is it possible, implementable, using current Galaxy tools to compare one new input VCF file against a 1000 of preloaded and generate a similarity report?
... Is it possible, implementable, using current Galaxy tools to compare one new input VCF file (from a Tuberculosis genome) against a 1000 of preloaded and then to generate a similarity report? What tools/modules and functions to include in such pipeline? Is there any kind of software for this task? ...
vcf written 5 days ago by msprindzhuk10
0
votes
0
answers
17
views
0
answers
Is it possible to tune a standard Galaxy instance on the Amazon cloud or we have chosen a wrong version and should switch to the CloudMan or the Globus Genomics?
... Is it possible to tune a standard Galaxy instance on the Amazon cloud or we have chosen a wrong version and should switch to the CloudMan or the Globus Genomics? Please send us a galaxy.ini file from the working Galaxy instance on the Amazon (link for download). We need to look at the tuned config ...
cloud amazon .ini written 5 days ago by msprindzhuk10
1
vote
1
answer
161
views
1
answer
What settings should be changed in a deployed standard Galaxy instance with PostgreSQL on the Amazon?
... What settings should be changed in a deployed standard Galaxy instance with PostgreSQL on the Amazon? We experience problems with Pilon and several other tools installation via the ToolShed. Only PostgreSQL connection string is new to the initial galaxy.ini, Should we uncomment other settings in ...
pilon ini cloud written 9 days ago by msprindzhuk10 • updated 8 days ago by Enis Afgan410
0
votes
1
answer
65
views
1
answers
Comment: C: Could you please give me a galaxy.ini file from the other perfectly working Gala
... need a galaxy.ini file from a standard Galaxy instance had been put on the cloud, not of the CloudMan or a local images, I have these, settings are different, thx. ...
written 9 days ago by msprindzhuk10

Latest awards to msprindzhuk

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 56 users visited in the last hour