User: dchalagarcia

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Posts by dchalagarcia

<prev • 5 results • page 1 of 1 • next >
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How to make Bowtie2 align a specific number of nt
... Hi, I am trying to align some tumor miRNA sequencing data to a viral genome using Bowtie2. In order to achieve the results I need, I need for Bowtie2 to only align a certain number of nt to my reference genome. Is there any way to tell Bowtie2 to only align the first 17 nts to my genome and ignore ...
input bowtie2 settings options written 5 weeks ago by dchalagarcia0 • updated 5 weeks ago by y.hoogstrate450
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fastqsanger to fastq
... Hello, I have been working with a dataset on Galaxy to groom and trim the adapters off. I currently need to download these files for further processing but they are in fastqsanger format. I need them to be in fastq format, does anyone know of a tool on Galaxy that will allow me to switch back from ...
fastqsanger format download fastq written 8 weeks ago by dchalagarcia0 • updated 8 weeks ago by Jennifer Hillman Jackson23k
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How to open HG38 and edit the header?
... HI, I am trying to change the header of HG38 but every time I try to open it with note pad and even note pad +++, it fails due to the large size of the genome. Does anyone know how to open the genome on Galaxy so that I can change the header? If not possible to do it in Galaxy, anyone know of anoth ...
hg38 edit genome written 11 weeks ago by dchalagarcia0 • updated 11 weeks ago by Jennifer Hillman Jackson23k
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Comment: C: How can I see the amount of reads and aligned reads from Bowtie?
... This is great, thank you! ...
written 10 months ago by dchalagarcia0
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How can I see the amount of reads and aligned reads from Bowtie?
... Hi, I am trying to see the amount of reads produced by Bowtie and also the number of aligned reads. I chose the stats option before running Bowtie. It gave me the stats for one of the runs (on defult settings) but it did not give me the stats for the second run (on Very sensitive). Does anyone k ...
bowtie written 10 months ago by dchalagarcia0 • updated 10 months ago by Bao Ho80

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