User: mk14609

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mk146090
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Posts by mk14609

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iGenomes UCSC hg38 annotation gtf file
... Dear community, I have been analysing rna-seq data using Tuxedo on galaxy. I download the iGenomes UCSC hg38 reference annotation .tar.gz file (14.9GB). Extracted the folder onto my computer and followed the path: Homo_sapiens_UCSC_hg38\Homo_sapiens\UCSC\hg38\Annotation\Archives\archive-2015-08-14 ...
igenomes ucsc reference gtf written 6 weeks ago by mk146090 • updated 6 weeks ago by Jennifer Hillman Jackson22k
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Cuffmerge ValueError merging assembled transcripts
... I am attempting to analyse my first RNA-seq experiment using Tuxedo tools. When I attempt to cuffmerge my assembled transcripts from cufflinks I get an error "Fatal error: Matched on Error Error running cuffmerge." and looking at the issue it says: "ValueError: invalid literal for int() with base 1 ...
galaxy cufflinks rna-seq written 11 weeks ago by mk146090 • updated 11 weeks ago by Jennifer Hillman Jackson22k

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