User: i-guigon

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i-guigon70
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Posts by i-guigon

<prev • 9 results • page 1 of 1 • next >
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Comment: C: Toolshed tool installed but missing
... Hello. It was probably a temporary problem with CEAS itself. Back then when I tried to install CEAS on another Galaxy instance with the admin panel, it failed. And right now I just created a Galaxy instance from my Docker container and CEAS is present. ...
written 7 days ago by i-guigon70
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Comment: C: TS dependencies install with conda doesn't work on galaxy Docker
... Thank you for your answer. I'll wait for more details :) ...
written 4 months ago by i-guigon70
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Answer: A: TS dependencies install with conda doesn't work on galaxy Docker
... Hmm, well in fact it doesn't work all fine. It's OK for the bedtools, but then I re-launched my Dockerfile with bgruening/galaxy-stable:17.05 and without installing manually my tools (which are bedtools, CEAS, deeptools and MACS2). In the list of installed tools in the Admin panel I have a fair ...
written 4 months ago by i-guigon70
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Answer: A: TS dependencies install will conda doesn't work on galaxy Docker
... I tried another tool (deeptools) on the 17.01 and I had the same error, the tool was not installed. I tried the version 17.05 without modifying galaxy.ini and it worked. So the version 17.05 seems to solve the problem. Thank you both for your help :) ...
written 4 months ago by i-guigon70
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TS dependencies install with conda doesn't work on galaxy Docker
... Hi there I created a Docker image of a Galaxy instance with some tools installed from the toolshed. It worked (almost) perfectly, except that the tools dependencies were not installed, I had to install them "manually" in my Dockerfile, which is quite tedious. I probably missed something with the co ...
docker conda dependencies written 4 months ago by i-guigon70
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Toolshed tool installed but missing
... Hello everyone I've created a Docker image which contains a Galaxy + some tools installed from the toolshed (main) and some manually installed tools. Everything works fine. I've pulled my docker image on several virtual machines (all are Ubuntu 16) (we'll need this for a training). My 3 first VMs ...
docker galaxy ceas toolshed written 6 months ago by i-guigon70
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Answer: A: Output dataset collection is empty
... I found precious informations [here][1] in the "Number of Output datasets cannot be determined until tool run" section which helped me to (more or less) solve my problem (and helped me to understand the "pattern" feature in the same process). I don't have the file universe_wsgi.ini, I found the opt ...
written 10 months ago by i-guigon70
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Comment: C: Output dataset collection is empty
... Thank you for your answer. Unfortunately it still doesn't work. The job fails and here is what I get: Error in file(file, ifelse(append, "a", "w")) : impossible d'ouvrir la connexion Calls: write.table -> file De plus : Warning message: In file(file, ifelse(append, "a", "w ...
written 10 months ago by i-guigon70
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Output dataset collection is empty
... Hello everyone I'm currently developping a tool which needs as input an RData object and a variable number of tabular files, and which will return another RData object and a variable number of tabular output files (as many as the input files) so I thought the dataset collections would be an interes ...
galaxy dataset collection discover_datasets written 10 months ago by i-guigon70

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Student 10 months ago, asked a question with at least 3 up-votes. For Output dataset collection is empty

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